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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030309 through 18771 annotations produced 1 hits



(CG1572):

Annotation Number : CG1572
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030309
Gbrowse : chrX:11449313-11452668 (-) // 100.0 //
Probeset : 1637430_s_at
Accessions : protein= NP_572726; /// NP_727535;, nucleotide= NM_132498; /// NM_167289;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0030309.
BDGP gene expression has embryonic in situ data for CG1572: 22 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0030309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 134 of 4 0.40Down
Head406 ± 434 of 4 1.90Up
Eye185 ± 54 of 4 0.88None
Thoracicoabdominal ganglion217 ± 44 of 4 1.00None
Salivary gland529 ± 64 of 4 2.52Up
Crop2578 ± 704 of 412.30Up
Midgut460 ± 144 of 4 2.20Up
Tubule79 ± 164 of 4 0.40Down
Hindgut1099 ± 144 of 4 5.20Up
Heart832 ± 894 of 4 3.96Up
Fat body313 ± 374 of 4 1.49Up
Ovary80 ± 44 of 4 0.40Down
Testis149 ± 64 of 4 0.70Down
Male accessory glands316 ± 314 of 4 1.50Up
Virgin spermatheca206 ± 274 of 4 0.98None
Mated spermatheca442 ± 714 of 4 2.10Up
Adult carcass475 ± 234 of 4 2.30Up
Larval CNS386 ± 1004 of 4 1.84Up
Larval Salivary gland1435 ± 594 of 4 6.83Up
Larval midgut659 ± 194 of 4 3.14Up
Larval tubule609 ± 374 of 4 2.90Up
Larval hindgut2144 ± 294 of 410.20Up
Larval fat body287 ± 324 of 4 1.40None
Larval trachea3511 ± 2094 of 416.70Up
Larval carcass2587 ± 1074 of 412.30Up
S2 cells (growing)1891 ± 444 of 4 8.99Up
Whole fly210 ± 94 of 4

Looking for FBgn0030309. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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