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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030310 through 18771 annotations produced 1 hits



semmelweis (PGRP-SA):

Annotation Number : CG11709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030310
Gbrowse : chrX:11455561-11456813 (+) // 100.0 //
Probeset : 1628884_at
Accessions : protein= NP_572727;, nucleotide= NM_132499;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from seque
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0030310.
VDRC has 1 RNAi stocks for FBgn0030310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 54 of 4 0.30Down
Head165 84 of 4 2.70Up
Eye155 244 of 4 2.57Up
Thoracicoabdominal ganglion15 10 of 4 0.20Down
Salivary gland42 81 of 4 0.70None
Crop77 34 of 4 1.30None
Midgut11 32 of 4 0.20Down
Tubule226 464 of 4 3.70Up
Hindgut86 54 of 4 1.40None
Heart374 144 of 4 6.19Up
Fat body684 344 of 411.31Up
Ovary4 10 of 4 0.10Down
Testis27 14 of 4 0.50None
Male accessory glands31 42 of 4 0.50None
Virgin spermatheca654 174 of 410.81Up
Mated spermatheca475 354 of 4 7.86Up
Adult carcass346 214 of 4 5.70Up
Larval CNS6 20 of 4 0.12Down
Larval Salivary gland56 54 of 4 0.93None
Larval midgut61 54 of 4 1.02None
Larval tubule139 244 of 4 2.30Up
Larval hindgut335 254 of 4 5.55Up
Larval fat body1459 854 of 424.10Up
Larval trachea739 2044 of 412.22Up
Larval carcass266 334 of 4 4.40Up
S2 cells (growing)845 124 of 413.97Up
Whole fly60 114 of 4

Looking for FBgn0030310. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime