FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030318 through 18771 annotations produced 3 hits

rho-4 ():

Annotation Number : Transposon.85
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 32109
Gbrowse : rhomboid-4
Probeset : 1632924_at
Accessions : protein= NM_080345; /// NM_167290; /// NM_167291;, nucleotide= FBgn0030318
Pathway : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for 32109.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 3	4 of 4	6.30	None
Head	7 ± 2	1 of 4	3.60	None
Eye	3 ± 1	1 of 4	1.93	None
Thoracicoabdominal ganglion	8 ± 3	1 of 4	3.90	None
Salivary gland	23 ± 2	3 of 4	11.64	Up
Crop	19 ± 5	4 of 4	9.70	Up
Midgut	2 ± 1	0 of 4	1.10	None
Tubule	6 ± 0	0 of 4	3.10	Up
Hindgut	9 ± 0	4 of 4	4.60	Up
Heart	2 ± 1	0 of 4	1.15	None
Fat body	34 ± 9	4 of 4	17.05	Up
Ovary	1 ± 0	0 of 4	0.70	None
Testis	3 ± 0	3 of 4	1.80	None
Male accessory glands	16 ± 2	4 of 4	7.90	Up
Virgin spermatheca	16 ± 2	4 of 4	8.15	Up
Mated spermatheca	12 ± 3	3 of 4	5.94	None
Adult carcass	5 ± 1	1 of 4	2.40	None
Larval CNS	25 ± 3	4 of 4	12.36	Up
Larval Salivary gland	4 ± 1	1 of 4	2.33	None
Larval midgut	1 ± 1	0 of 4	0.94	None
Larval tubule	3 ± 1	1 of 4	1.50	None
Larval hindgut	7 ± 0	4 of 4	3.74	Up
Larval fat body	2 ± 1	0 of 4	1.30	None
Larval trachea	3 ± 2	2 of 4	1.79	None
Larval carcass	1 ± 0	0 of 4	0.68	None
S2 cells (growing)	1 ± 0	1 of 4	0.93	None
Whole fly	2 ± 0	0 of 4

rhomboid-4 (rho-4):

Annotation Number : CG1697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030318
Gbrowse : chrX:11493873-11500034 (+) // 100.0 //
Probeset : 1623692_s_at
Accessions : protein= NP_525084; /// NP_727538; /// NP_727539;, nucleotide= NM_080345; /// NM_167290; /// NM_167291;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for FBgn0030318.
BioGrid reports that CG1697 interacts with CG4550 CG8409 CG8597 CG9118 CG4385 .
VDRC has 3 RNAi stocks for FBgn0030318 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	51 ± 6	4 of 4	0.40	Down
Head	59 ± 5	4 of 4	0.50	Down
Eye	49 ± 4	4 of 4	0.41	Down
Thoracicoabdominal ganglion	47 ± 2	4 of 4	0.40	Down
Salivary gland	176 ± 21	4 of 4	1.46	None
Crop	290 ± 19	4 of 4	2.40	Up
Midgut	378 ± 9	4 of 4	3.10	Up
Tubule	144 ± 9	4 of 4	1.20	Up
Hindgut	239 ± 9	4 of 4	2.00	Up
Heart	36 ± 2	4 of 4	0.30	Down
Fat body	53 ± 3	4 of 4	0.44	Down
Ovary	211 ± 9	4 of 4	1.70	Up
Testis	61 ± 3	4 of 4	0.50	Down
Male accessory glands	97 ± 6	4 of 4	0.80	None
Virgin spermatheca	163 ± 4	4 of 4	1.35	None
Mated spermatheca	215 ± 22	4 of 4	1.78	Up
Adult carcass	71 ± 6	4 of 4	0.60	None
Larval CNS	151 ± 19	4 of 4	1.25	None
Larval Salivary gland	260 ± 13	4 of 4	2.15	Up
Larval midgut	463 ± 43	4 of 4	3.82	Up
Larval tubule	330 ± 14	4 of 4	2.70	Up
Larval hindgut	343 ± 12	4 of 4	2.84	Up
Larval fat body	70 ± 3	4 of 4	0.60	None
Larval trachea	244 ± 25	4 of 4	2.02	Up
Larval carcass	193 ± 21	4 of 4	1.60	Up
S2 cells (growing)	590 ± 17	4 of 4	4.88	Up
Whole fly	121 ± 18	4 of 4

rho-4 ():

Annotation Number : Transposon.85
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 32109
Gbrowse : rhomboid-4
Probeset : 1623158_s_at
Accessions : protein= NM_080345; /// NM_167290; /// NM_167291;, nucleotide= FBgn0030318
Pathway : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for 32109.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 1	4 of 4	0.60	Down
Head	38 ± 7	4 of 4	0.50	Down
Eye	36 ± 3	4 of 4	0.51	Down
Thoracicoabdominal ganglion	31 ± 2	4 of 4	0.40	Down
Salivary gland	113 ± 14	4 of 4	1.60	None
Crop	155 ± 10	4 of 4	2.20	Up
Midgut	183 ± 9	4 of 4	2.60	Up
Tubule	102 ± 6	4 of 4	1.40	Up
Hindgut	125 ± 10	4 of 4	1.80	Up
Heart	18 ± 2	3 of 4	0.26	Down
Fat body	39 ± 2	4 of 4	0.56	Down
Ovary	129 ± 3	4 of 4	1.80	Up
Testis	44 ± 3	4 of 4	0.60	Down
Male accessory glands	64 ± 2	4 of 4	0.90	None
Virgin spermatheca	127 ± 11	4 of 4	1.79	Up
Mated spermatheca	176 ± 26	4 of 4	2.48	Up
Adult carcass	45 ± 1	4 of 4	0.60	Down
Larval CNS	114 ± 15	4 of 4	1.61	Up
Larval Salivary gland	196 ± 7	4 of 4	2.76	Up
Larval midgut	383 ± 6	4 of 4	5.39	Up
Larval tubule	157 ± 13	4 of 4	2.20	Up
Larval hindgut	234 ± 10	4 of 4	3.29	Up
Larval fat body	30 ± 3	4 of 4	0.40	Down
Larval trachea	154 ± 13	4 of 4	2.17	Up
Larval carcass	135 ± 14	4 of 4	1.90	Up
S2 cells (growing)	232 ± 4	4 of 4	3.27	Up
Whole fly	71 ± 6	4 of 4

Looking for FBgn0030318. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720