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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030318 through 18771 annotations produced 3 hits



rhomboid-4 (rho-4):

Annotation Number : CG1697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030318
Gbrowse : chrX:11493873-11500034 (+) // 100.0 //
Probeset : 1623692_s_at
Accessions : protein= NP_525084; /// NP_727538; /// NP_727539;, nucleotide= NM_080345; /// NM_167290; /// NM_167291;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for FBgn0030318.
BioGrid reports that CG1697 interacts with CG4550 CG8409 CG8597 CG9118 CG4385 .
VDRC has 3 RNAi stocks for FBgn0030318 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 64 of 4 0.40Down
Head59 54 of 4 0.50Down
Eye49 44 of 4 0.41Down
Thoracicoabdominal ganglion47 24 of 4 0.40Down
Salivary gland176 214 of 4 1.46None
Crop290 194 of 4 2.40Up
Midgut378 94 of 4 3.10Up
Tubule144 94 of 4 1.20Up
Hindgut239 94 of 4 2.00Up
Heart36 24 of 4 0.30Down
Fat body53 34 of 4 0.44Down
Ovary211 94 of 4 1.70Up
Testis61 34 of 4 0.50Down
Male accessory glands97 64 of 4 0.80None
Virgin spermatheca163 44 of 4 1.35None
Mated spermatheca215 224 of 4 1.78Up
Adult carcass71 64 of 4 0.60None
Larval CNS151 194 of 4 1.25None
Larval Salivary gland260 134 of 4 2.15Up
Larval midgut463 434 of 4 3.82Up
Larval tubule330 144 of 4 2.70Up
Larval hindgut343 124 of 4 2.84Up
Larval fat body70 34 of 4 0.60None
Larval trachea244 254 of 4 2.02Up
Larval carcass193 214 of 4 1.60Up
S2 cells (growing)590 174 of 4 4.88Up
Whole fly121 184 of 4



rho-4 ():

Annotation Number : Transposon.85
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 32109
Gbrowse : rhomboid-4
Probeset : 1623158_s_at
Accessions : protein= NM_080345; /// NM_167290; /// NM_167291;, nucleotide= FBgn0030318
Pathway : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for 32109.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 14 of 4 0.60Down
Head38 74 of 4 0.50Down
Eye36 34 of 4 0.51Down
Thoracicoabdominal ganglion31 24 of 4 0.40Down
Salivary gland113 144 of 4 1.60None
Crop155 104 of 4 2.20Up
Midgut183 94 of 4 2.60Up
Tubule102 64 of 4 1.40Up
Hindgut125 104 of 4 1.80Up
Heart18 23 of 4 0.26Down
Fat body39 24 of 4 0.56Down
Ovary129 34 of 4 1.80Up
Testis44 34 of 4 0.60Down
Male accessory glands64 24 of 4 0.90None
Virgin spermatheca127 114 of 4 1.79Up
Mated spermatheca176 264 of 4 2.48Up
Adult carcass45 14 of 4 0.60Down
Larval CNS114 154 of 4 1.61Up
Larval Salivary gland196 74 of 4 2.76Up
Larval midgut383 64 of 4 5.39Up
Larval tubule157 134 of 4 2.20Up
Larval hindgut234 104 of 4 3.29Up
Larval fat body30 34 of 4 0.40Down
Larval trachea154 134 of 4 2.17Up
Larval carcass135 144 of 4 1.90Up
S2 cells (growing)232 44 of 4 3.27Up
Whole fly71 64 of 4



rho-4 ():

Annotation Number : Transposon.85
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 32109
Gbrowse : rhomboid-4
Probeset : 1632924_at
Accessions : protein= NM_080345; /// NM_167290; /// NM_167291;, nucleotide= FBgn0030318
Pathway : 0003677 // DNA binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // infer
FlyMine data for 32109.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 34 of 4 6.30None
Head7 21 of 4 3.60None
Eye3 11 of 4 1.93None
Thoracicoabdominal ganglion8 31 of 4 3.90None
Salivary gland23 23 of 411.64Up
Crop19 54 of 4 9.70Up
Midgut2 10 of 4 1.10None
Tubule6 00 of 4 3.10Up
Hindgut9 04 of 4 4.60Up
Heart2 10 of 4 1.15None
Fat body34 94 of 417.05Up
Ovary1 00 of 4 0.70None
Testis3 03 of 4 1.80None
Male accessory glands16 24 of 4 7.90Up
Virgin spermatheca16 24 of 4 8.15Up
Mated spermatheca12 33 of 4 5.94None
Adult carcass5 11 of 4 2.40None
Larval CNS25 34 of 412.36Up
Larval Salivary gland4 11 of 4 2.33None
Larval midgut1 10 of 4 0.94None
Larval tubule3 11 of 4 1.50None
Larval hindgut7 04 of 4 3.74Up
Larval fat body2 10 of 4 1.30None
Larval trachea3 22 of 4 1.79None
Larval carcass1 00 of 4 0.68None
S2 cells (growing)1 01 of 4 0.93None
Whole fly2 00 of 4

Looking for FBgn0030318. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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