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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030320 through 18771 annotations produced 1 hits



(CG2247):

Annotation Number : CG2247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030320
Gbrowse : chrX:11500321-11505679 (-) // 100.0 //
Probeset : 1635712_at
Accessions : protein= NP_572735;, nucleotide= NM_132507;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030320.
BDGP gene expression has embryonic in situ data for CG2247: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030320 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030320 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 94 of 4 0.70Down
Head40 ± 14 of 4 0.30Down
Eye49 ± 54 of 4 0.39Down
Thoracicoabdominal ganglion57 ± 34 of 4 0.50Down
Salivary gland50 ± 83 of 4 0.40Down
Crop84 ± 44 of 4 0.70Down
Midgut39 ± 34 of 4 0.30Down
Tubule39 ± 34 of 4 0.30Down
Hindgut41 ± 14 of 4 0.30Down
Heart44 ± 34 of 4 0.35Down
Fat body46 ± 44 of 4 0.37Down
Ovary331 ± 64 of 4 2.60Up
Testis114 ± 44 of 4 0.90None
Male accessory glands168 ± 124 of 4 1.30Up
Virgin spermatheca62 ± 54 of 4 0.49Down
Mated spermatheca50 ± 34 of 4 0.40Down
Adult carcass36 ± 34 of 4 0.30Down
Larval CNS207 ± 114 of 4 1.65Up
Larval Salivary gland136 ± 54 of 4 1.08None
Larval midgut42 ± 24 of 4 0.34Down
Larval tubule49 ± 64 of 4 0.40Down
Larval hindgut48 ± 14 of 4 0.39Down
Larval fat body55 ± 44 of 4 0.40Down
Larval trachea96 ± 24 of 4 0.77Down
Larval carcass73 ± 34 of 4 0.58Down
S2 cells (growing)96 ± 54 of 4 0.76Down
Whole fly125 ± 74 of 4

Looking for FBgn0030320. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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