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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030321 through 18771 annotations produced 1 hits



(CG1703):

Annotation Number : CG1703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030321
Gbrowse : chrX:11506049-11509139 (+) // 100.0 //
Probeset : 1637887_at
Accessions : protein= NP_572736;, nucleotide= NM_132508;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0030321.
VDRC has 2 RNAi stocks for FBgn0030321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 64 of 4 0.30Down
Head231 ± 14 of 4 0.60Down
Eye157 ± 74 of 4 0.41Down
Thoracicoabdominal ganglion135 ± 44 of 4 0.30Down
Salivary gland357 ± 144 of 4 0.92None
Crop269 ± 34 of 4 0.70Down
Midgut269 ± 94 of 4 0.70Down
Tubule341 ± 404 of 4 0.90None
Hindgut204 ± 54 of 4 0.50Down
Heart234 ± 94 of 4 0.60Down
Fat body386 ± 664 of 4 0.99None
Ovary648 ± 424 of 4 1.70Up
Testis227 ± 124 of 4 0.60Down
Male accessory glands460 ± 94 of 4 1.20Up
Virgin spermatheca539 ± 94 of 4 1.39Up
Mated spermatheca725 ± 484 of 4 1.86Up
Adult carcass292 ± 194 of 4 0.80Down
Larval CNS389 ± 234 of 4 1.00None
Larval Salivary gland766 ± 304 of 4 1.97Up
Larval midgut225 ± 104 of 4 0.58Down
Larval tubule244 ± 84 of 4 0.60Down
Larval hindgut337 ± 284 of 4 0.87None
Larval fat body241 ± 214 of 4 0.60Down
Larval trachea443 ± 794 of 4 1.14None
Larval carcass519 ± 644 of 4 1.33None
S2 cells (growing)487 ± 144 of 4 1.25Up
Whole fly389 ± 224 of 4

Looking for FBgn0030321. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime