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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030323 through 18771 annotations produced 1 hits



(CG2371):

Annotation Number : CG2371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030323
Gbrowse : chrX:11571376-11572584 (-) // 100.0 //
Probeset : 1622943_s_at
Accessions : protein= NP_572738; /// NP_727545; /// NP_727546;, nucleotide= NM_132510; /// NM_167293; /// NM_167294;
FlyMine data for FBgn0030323.
BDGP gene expression has embryonic in situ data for CG2371: 4 pix of staining in 1 body parts.
BioGrid reports that CG2371 interacts with CG3052 CG31820 CG3217 CG32560 CG32732 CG3725 CG4385 CG4756 CG4863 CG5025 CG6357 CG6450 CG6539 CG7725 CG8183 CG8203 CG8549 CG8585 CG9734 .
VDRC has 2 RNAi stocks for FBgn0030323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 24 of 4 1.60Up
Head60 14 of 4 0.80Down
Eye77 34 of 4 0.97None
Thoracicoabdominal ganglion91 14 of 4 1.10Up
Salivary gland55 42 of 4 0.69Down
Crop40 24 of 4 0.50Down
Midgut42 23 of 4 0.50Down
Tubule44 24 of 4 0.60Down
Hindgut34 14 of 4 0.40Down
Heart41 24 of 4 0.52Down
Fat body33 44 of 4 0.42Down
Ovary162 44 of 4 2.00Up
Testis37 34 of 4 0.50Down
Male accessory glands97 23 of 4 1.20Up
Virgin spermatheca33 34 of 4 0.42Down
Mated spermatheca44 54 of 4 0.55Down
Adult carcass39 33 of 4 0.50Down
Larval CNS61 04 of 4 0.77Down
Larval Salivary gland54 34 of 4 0.68Down
Larval midgut38 23 of 4 0.48Down
Larval tubule36 14 of 4 0.50Down
Larval hindgut35 34 of 4 0.44Down
Larval fat body47 24 of 4 0.60Down
Larval trachea38 34 of 4 0.48Down
Larval carcass30 14 of 4 0.38Down
S2 cells (growing)42 04 of 4 0.54Down
Whole fly80 34 of 4

Looking for FBgn0030323. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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