FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030329 through 18771 annotations produced 1 hits

pretaporter (prtp):

Annotation Number : CG1837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030329
Gbrowse : chrX:11611000-11613931 (+) // 100.0 //
Probeset : 1637545_at
Accessions : protein= NP_572742;, nucleotide= NM_132514;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from seq
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0030329.
BDGP gene expression has embryonic in situ data for CG1837: 20 pix of staining in 10 body parts.
BioGrid reports that CG1837 interacts with CG33141 .
VDRC has 1 RNAi stocks for FBgn0030329 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	473 ± 5	4 of 4	1.30	None
Head	325 ± 19	4 of 4	0.90	None
Eye	283 ± 6	4 of 4	0.78	Down
Thoracicoabdominal ganglion	343 ± 7	4 of 4	1.00	None
Salivary gland	233 ± 10	4 of 4	0.64	Down
Crop	218 ± 6	4 of 4	0.60	Down
Midgut	830 ± 21	4 of 4	2.30	Up
Tubule	441 ± 33	4 of 4	1.20	Up
Hindgut	314 ± 5	4 of 4	0.90	None
Heart	597 ± 40	4 of 4	1.65	Up
Fat body	842 ± 64	4 of 4	2.33	Up
Ovary	344 ± 3	4 of 4	1.00	None
Testis	522 ± 18	4 of 4	1.40	Up
Male accessory glands	949 ± 25	4 of 4	2.60	Up
Virgin spermatheca	578 ± 26	4 of 4	1.60	Up
Mated spermatheca	636 ± 40	4 of 4	1.76	Up
Adult carcass	422 ± 26	4 of 4	1.20	None
Larval CNS	619 ± 30	4 of 4	1.71	Up
Larval Salivary gland	454 ± 11	4 of 4	1.26	Up
Larval midgut	3122 ± 353	4 of 4	8.63	Up
Larval tubule	715 ± 15	4 of 4	2.00	Up
Larval hindgut	827 ± 80	4 of 4	2.29	Up
Larval fat body	315 ± 15	4 of 4	0.90	None
Larval trachea	333 ± 29	4 of 4	0.92	None
Larval carcass	493 ± 14	4 of 4	1.36	Up
S2 cells (growing)	906 ± 9	4 of 4	2.51	Up
Whole fly	361 ± 24	4 of 4

Looking for FBgn0030329. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720