FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030334 through 18771 annotations produced 2 hits

Karl (Karl):

Annotation Number : CG4139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030334
Gbrowse : chrX:11682878-11686287 (+) // 100.0 //
Probeset : 1633385_at
Accessions : protein= NP_572748; /// NP_727559;, nucleotide= NM_132520; /// NM_167303;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0030334.
VDRC has 2 RNAi stocks for FBgn0030334 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 1	4 of 4	1.50	Up
Head	60 ± 5	4 of 4	4.50	Up
Eye	11 ± 1	3 of 4	0.87	None
Thoracicoabdominal ganglion	9 ± 2	3 of 4	0.70	None
Salivary gland	5 ± 1	0 of 4	0.43	Down
Crop	4 ± 1	0 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	1 ± 0	0 of 4	0.10	Down
Heart	467 ± 19	4 of 4	34.85	Up
Fat body	19 ± 4	2 of 4	1.43	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	4 ± 0	1 of 4	0.30	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	7 ± 2	0 of 4	0.54	None
Mated spermatheca	6 ± 2	0 of 4	0.50	None
Adult carcass	71 ± 11	4 of 4	5.30	Up
Larval CNS	3 ± 1	0 of 4	0.24	Down
Larval Salivary gland	2 ± 0	0 of 4	0.15	Down
Larval midgut	4 ± 1	0 of 4	0.30	Down
Larval tubule	19 ± 3	4 of 4	1.40	None
Larval hindgut	4 ± 1	0 of 4	0.36	Down
Larval fat body	143 ± 8	4 of 4	10.70	Up
Larval trachea	22 ± 5	4 of 4	1.64	Up
Larval carcass	71 ± 6	4 of 4	5.30	Up
S2 cells (growing)	1408 ± 42	4 of 4	104.90	Up
Whole fly	13 ± 1	4 of 4

Karl (Karl):

Annotation Number : CG4139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030334
Gbrowse : chrX:11682878-11685944 (+) // 100.0 //
Probeset : 1628715_a_at
Accessions : protein= NP_572748; /// NP_727559;, nucleotide= NM_132520; /// NM_167303;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0030334.
VDRC has 2 RNAi stocks for FBgn0030334 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	31 ± 0	4 of 4	1.50	Up
Head	76 ± 3	4 of 4	3.60	Up
Eye	26 ± 4	4 of 4	1.25	None
Thoracicoabdominal ganglion	15 ± 1	3 of 4	0.70	None
Salivary gland	7 ± 2	0 of 4	0.38	Down
Crop	3 ± 0	0 of 4	0.20	Down
Midgut	7 ± 1	0 of 4	0.30	Down
Tubule	3 ± 1	0 of 4	0.10	Down
Hindgut	3 ± 0	0 of 4	0.20	Down
Heart	546 ± 6	4 of 4	25.95	Up
Fat body	30 ± 3	2 of 4	1.43	Up
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	6 ± 0	2 of 4	0.30	Down
Male accessory glands	6 ± 1	0 of 4	0.30	Down
Virgin spermatheca	7 ± 1	0 of 4	0.36	Down
Mated spermatheca	9 ± 0	0 of 4	0.44	Down
Adult carcass	103 ± 8	4 of 4	4.90	Up
Larval CNS	6 ± 1	1 of 4	0.31	Down
Larval Salivary gland	10 ± 3	0 of 4	0.48	None
Larval midgut	12 ± 2	1 of 4	0.60	None
Larval tubule	35 ± 4	4 of 4	1.70	None
Larval hindgut	12 ± 0	1 of 4	0.60	None
Larval fat body	409 ± 34	4 of 4	19.50	Up
Larval trachea	46 ± 9	4 of 4	2.19	Up
Larval carcass	91 ± 4	4 of 4	4.34	Up
S2 cells (growing)	2022 ± 45	4 of 4	96.10	Up
Whole fly	21 ± 2	2 of 4

Looking for FBgn0030334. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720