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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030336 through 18771 annotations produced 1 hits



(CG1578):

Annotation Number : CG1578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030336
Gbrowse : chrX:11703387-11710565 (-) // 100.0 //
Probeset : 1629983_at
Accessions : protein= NP_572749;, nucleotide= NM_132521;
FlyMine data for FBgn0030336.
BioGrid reports that CG1578 interacts with CG6197 CG15822 .
TRiP has 1 RNAi stocks for FBgn0030336 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 ± 24 of 4 1.90Up
Head134 ± 54 of 4 0.90None
Eye214 ± 44 of 4 1.50Up
Thoracicoabdominal ganglion267 ± 84 of 4 1.90Up
Salivary gland1006 ± 264 of 4 7.01Up
Crop124 ± 44 of 4 0.90Down
Midgut87 ± 44 of 4 0.60Down
Tubule101 ± 44 of 4 0.70Down
Hindgut115 ± 54 of 4 0.80Down
Heart149 ± 44 of 4 1.04None
Fat body241 ± 154 of 4 1.68Up
Ovary296 ± 74 of 4 2.10Up
Testis10 ± 14 of 4 0.10Down
Male accessory glands124 ± 54 of 4 0.90Down
Virgin spermatheca246 ± 124 of 4 1.71Up
Mated spermatheca277 ± 124 of 4 1.93Up
Adult carcass151 ± 64 of 4 1.10None
Larval CNS179 ± 164 of 4 1.25Up
Larval Salivary gland238 ± 134 of 4 1.66Up
Larval midgut100 ± 74 of 4 0.70Down
Larval tubule106 ± 34 of 4 0.70Down
Larval hindgut149 ± 104 of 4 1.04None
Larval fat body114 ± 74 of 4 0.80Down
Larval trachea150 ± 134 of 4 1.05None
Larval carcass151 ± 84 of 4 1.06None
S2 cells (growing)94 ± 14 of 4 0.66Down
Whole fly143 ± 34 of 4

Looking for FBgn0030336. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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