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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030338 through 18771 annotations produced 1 hits


Annotation Number : CG15741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030338
Gbrowse : chrX:11731635-11732043 (-) // 100.0 //
Probeset : 1628519_at
Accessions : protein= NP_572751;, nucleotide= NM_132523;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030338.
BioGrid reports that CG15741 interacts with CG7955 CG18005 .
VDRC has 3 RNAi stocks for FBgn0030338 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.70None
Head8 20 of 4 0.80None
Eye7 20 of 4 0.69None
Thoracicoabdominal ganglion4 20 of 4 0.40None
Salivary gland39 70 of 4 3.94Up
Crop12 30 of 4 1.20None
Midgut22 30 of 4 2.20Up
Tubule10 10 of 4 1.00None
Hindgut10 11 of 4 1.00None
Heart13 10 of 4 1.31None
Fat body21 93 of 4 2.17None
Ovary3 10 of 4 0.40Down
Testis5 10 of 4 0.50None
Male accessory glands18 30 of 4 1.90None
Virgin spermatheca14 10 of 4 1.39None
Mated spermatheca12 02 of 4 1.27None
Adult carcass16 10 of 4 1.70Up
Larval CNS9 20 of 4 0.90None
Larval Salivary gland1378 3474 of 4136.49Up
Larval midgut23 20 of 4 2.32Up
Larval tubule10 12 of 4 1.00None
Larval hindgut13 02 of 4 1.36None
Larval fat body10 20 of 4 1.00None
Larval trachea9 31 of 4 0.94None
Larval carcass13 10 of 4 1.34None
S2 cells (growing)7 00 of 4 0.74None
Whole fly10 11 of 4

Looking for FBgn0030338. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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