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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030340 through 18771 annotations produced 1 hits



(CG15740):

Annotation Number : CG15740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030340
Gbrowse : chrX:11736694-11740198 (-) // 100.0 //
Probeset : 1632086_at
Accessions : protein= NP_572753;, nucleotide= NM_132525;
FlyMine data for FBgn0030340.
BDGP gene expression has embryonic in situ data for CG15740: 4 pix of staining in 1 body parts.
BioGrid reports that CG15740 interacts with CG33017 .
VDRC has 1 RNAi stocks for FBgn0030340 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head3 ± 10 of 4 1.60None
Eye1 ± 00 of 4 0.80None
Thoracicoabdominal ganglion2 ± 00 of 4 1.10None
Salivary gland7 ± 50 of 4 3.85None
Crop3 ± 10 of 4 1.60None
Midgut1 ± 00 of 4 0.60None
Tubule1 ± 00 of 4 0.60Down
Hindgut3 ± 10 of 4 1.90None
Heart0 ± 00 of 4 0.29None
Fat body4 ± 30 of 4 2.33None
Ovary2 ± 10 of 4 1.30None
Testis1 ± 00 of 4 0.50None
Male accessory glands1 ± 00 of 4 0.70None
Virgin spermatheca2 ± 00 of 4 0.98None
Mated spermatheca4 ± 10 of 4 2.04None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS2 ± 10 of 4 1.43None
Larval Salivary gland5 ± 10 of 4 2.51None
Larval midgut3 ± 10 of 4 1.90None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut5 ± 10 of 4 2.54None
Larval fat body4 ± 20 of 4 2.40None
Larval trachea3 ± 30 of 4 1.98None
Larval carcass2 ± 00 of 4 1.39None
S2 cells (growing)16 ± 04 of 4 8.06Up
Whole fly2 ± 10 of 4

Looking for FBgn0030340. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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