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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030342 through 18771 annotations produced 1 hits



(CG10347):

Annotation Number : CG10347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030342
Gbrowse : chrX:11746724-11748913 (-) // 100.0 //
Probeset : 1635911_s_at
Accessions : protein= NP_572755; /// NP_727572;, nucleotide= NM_132527; /// NM_167310;
FlyMine data for FBgn0030342.
VDRC has 1 RNAi stocks for FBgn0030342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 ± 54 of 4 0.80None
Head122 ± 64 of 4 0.80None
Eye169 ± 74 of 4 1.16None
Thoracicoabdominal ganglion108 ± 24 of 4 0.70Down
Salivary gland105 ± 64 of 4 0.72Down
Crop95 ± 84 of 4 0.70Down
Midgut94 ± 24 of 4 0.60Down
Tubule110 ± 14 of 4 0.80Down
Hindgut110 ± 54 of 4 0.80Down
Heart85 ± 24 of 4 0.58Down
Fat body94 ± 94 of 4 0.65Down
Ovary172 ± 84 of 4 1.20None
Testis249 ± 164 of 4 1.70Up
Male accessory glands219 ± 104 of 4 1.50Up
Virgin spermatheca112 ± 54 of 4 0.77Down
Mated spermatheca118 ± 24 of 4 0.81None
Adult carcass97 ± 74 of 4 0.70Down
Larval CNS144 ± 104 of 4 0.99None
Larval Salivary gland165 ± 54 of 4 1.13None
Larval midgut64 ± 20 of 4 0.44Down
Larval tubule110 ± 54 of 4 0.80Down
Larval hindgut99 ± 44 of 4 0.68Down
Larval fat body93 ± 104 of 4 0.60Down
Larval trachea211 ± 244 of 4 1.45Up
Larval carcass94 ± 44 of 4 0.65Down
S2 cells (growing)184 ± 64 of 4 1.26Up
Whole fly146 ± 104 of 4

Looking for FBgn0030342. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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