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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030344 through 18771 annotations produced 1 hits



(CG2025):

Annotation Number : CG2025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030344
Gbrowse : chrX:11758681-11762917 (-) // 100.0 //
Probeset : 1639499_at
Accessions : protein= NP_572757;, nucleotide= NM_132529;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0030344.
BioGrid reports that CG2025 interacts with CG8936 .
VDRC has 3 RNAi stocks for FBgn0030344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 54 of 4 1.30Up
Head129 14 of 4 0.80Down
Eye91 44 of 4 0.57Down
Thoracicoabdominal ganglion187 64 of 4 1.20Up
Salivary gland207 74 of 4 1.29Up
Crop113 44 of 4 0.70Down
Midgut160 34 of 4 1.00None
Tubule87 24 of 4 0.50Down
Hindgut128 34 of 4 0.80Down
Heart94 44 of 4 0.59Down
Fat body191 184 of 4 1.20Up
Ovary339 04 of 4 2.10Up
Testis155 84 of 4 1.00None
Male accessory glands367 44 of 4 2.30Up
Virgin spermatheca99 64 of 4 0.62Down
Mated spermatheca118 104 of 4 0.74Down
Adult carcass99 54 of 4 0.60Down
Larval CNS434 214 of 4 2.71Up
Larval Salivary gland354 164 of 4 2.21Up
Larval midgut133 54 of 4 0.83Down
Larval tubule143 44 of 4 0.90None
Larval hindgut194 74 of 4 1.21Up
Larval fat body146 34 of 4 0.90None
Larval trachea164 204 of 4 1.03None
Larval carcass179 104 of 4 1.12None
S2 cells (growing)308 104 of 4 1.93Up
Whole fly160 84 of 4

Looking for FBgn0030344. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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