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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030351 through 18771 annotations produced 1 hits



(CG1840):

Annotation Number : CG1840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030351
Gbrowse : chrX:11782390-11783222 (+) // 100.0 //
Probeset : 1636902_at
Accessions : protein= NP_572764;, nucleotide= NM_132536;
FlyMine data for FBgn0030351.
VDRC has 1 RNAi stocks for FBgn0030351 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 54 of 4 1.40Up
Head66 24 of 4 1.00None
Eye81 24 of 4 1.28Up
Thoracicoabdominal ganglion81 74 of 4 1.30None
Salivary gland105 174 of 4 1.65None
Crop74 44 of 4 1.20None
Midgut81 24 of 4 1.30Up
Tubule69 124 of 4 1.10None
Hindgut60 24 of 4 0.90None
Heart135 64 of 4 2.12Up
Fat body55 94 of 4 0.87None
Ovary77 44 of 4 1.20Up
Testis127 94 of 4 2.00Up
Male accessory glands113 114 of 4 1.80Up
Virgin spermatheca33 24 of 4 0.52Down
Mated spermatheca44 54 of 4 0.69Down
Adult carcass54 124 of 4 0.90None
Larval CNS71 114 of 4 1.12None
Larval Salivary gland111 84 of 4 1.75Up
Larval midgut36 04 of 4 0.57Down
Larval tubule82 64 of 4 1.30None
Larval hindgut34 34 of 4 0.54Down
Larval fat body78 64 of 4 1.20None
Larval trachea125 184 of 4 1.96Up
Larval carcass45 34 of 4 0.71Down
S2 cells (growing)72 24 of 4 1.14Up
Whole fly63 14 of 4

Looking for FBgn0030351. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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