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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030352 through 18771 annotations produced 1 hits



(CG15738):

Annotation Number : CG15738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030352
Gbrowse : chrX:11786042-11787782 (+) // 100.0 //
Probeset : 1626353_at
Accessions : protein= NP_572765;, nucleotide= NM_132537;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : 0016740 // transferase activity // inferred from electronic annotation
FlyMine data for FBgn0030352.
BDGP gene expression has embryonic in situ data for CG15738: 4 pix of staining in 1 body parts.
Homophila reports that CG15738 is a close match (4e-54) to human gene (NP_689629), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0030352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 24 of 4 1.00None
Head77 ± 44 of 4 0.70Down
Eye96 ± 54 of 4 0.91None
Thoracicoabdominal ganglion134 ± 34 of 4 1.30Up
Salivary gland92 ± 54 of 4 0.87None
Crop93 ± 14 of 4 0.90Down
Midgut96 ± 24 of 4 0.90None
Tubule140 ± 64 of 4 1.30Up
Hindgut94 ± 34 of 4 0.90None
Heart86 ± 24 of 4 0.82Down
Fat body85 ± 74 of 4 0.81Down
Ovary166 ± 34 of 4 1.60Up
Testis72 ± 24 of 4 0.70Down
Male accessory glands80 ± 54 of 4 0.80Down
Virgin spermatheca97 ± 34 of 4 0.92None
Mated spermatheca107 ± 64 of 4 1.02None
Adult carcass101 ± 64 of 4 1.00None
Larval CNS100 ± 64 of 4 0.95None
Larval Salivary gland95 ± 34 of 4 0.90None
Larval midgut83 ± 54 of 4 0.79Down
Larval tubule94 ± 104 of 4 0.90None
Larval hindgut89 ± 64 of 4 0.85None
Larval fat body70 ± 54 of 4 0.70Down
Larval trachea90 ± 14 of 4 0.85Down
Larval carcass82 ± 74 of 4 0.78Down
S2 cells (growing)90 ± 14 of 4 0.85Down
Whole fly105 ± 34 of 4

Looking for FBgn0030352. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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