FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030359 through 18771 annotations produced 1 hits

(CG18130):

Annotation Number : CG18130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030359
Gbrowse : chrX:11884154-11886801 (-) // 100.0 //
Probeset : 1639789_at
Accessions : protein= NP_001138188; /// NP_572772;, nucleotide= NM_001144716; /// NM_132544;
FlyMine data for FBgn0030359.
Homophila reports that CG18130 is a close match (2e-14) to human gene CILD6;SPTRX2;TXNDC3 (NP_057700), a gene associated with Ciliary dyskinesia, primary, 6, 610852 (3).
VDRC has 1 RNAi stocks for FBgn0030359 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	None
Head	16 ± 0	0 of 4	1.00	None
Eye	4 ± 1	0 of 4	0.26	None
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.40	None
Salivary gland	17 ± 4	0 of 4	1.10	None
Crop	1 ± 0	0 of 4	0.10	None
Midgut	2 ± 0	0 of 4	0.20	None
Tubule	3 ± 1	0 of 4	0.20	Down
Hindgut	1 ± 0	0 of 4	0.10	None
Heart	3 ± 1	0 of 4	0.20	None
Fat body	2 ± 0	0 of 4	0.17	None
Ovary	1 ± 0	0 of 4	0.10	None
Testis	230 ± 7	4 of 4	14.60	Up
Male accessory glands	2 ± 0	0 of 4	0.10	None
Virgin spermatheca	2 ± 0	0 of 4	0.14	None
Mated spermatheca	3 ± 1	0 of 4	0.21	None
Adult carcass	2 ± 0	0 of 4	0.10	None
Larval CNS	3 ± 2	0 of 4	0.21	None
Larval Salivary gland	2 ± 0	0 of 4	0.18	None
Larval midgut	8 ± 3	0 of 4	0.55	None
Larval tubule	1 ± 0	0 of 4	0.10	None
Larval hindgut	3 ± 0	0 of 4	0.22	None
Larval fat body	32 ± 10	1 of 4	2.00	None
Larval trachea	7 ± 4	0 of 4	0.45	None
Larval carcass	9 ± 2	0 of 4	0.59	None
S2 cells (growing)	1 ± 0	0 of 4	0.12	None
Whole fly	15 ± 7	0 of 4

Looking for FBgn0030359. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720