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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030360 through 18771 annotations produced 1 hits



(CG1806):

Annotation Number : CG1806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030360
Gbrowse : chrX:11901210-11903940 (+) // 100.0 //
Probeset : 1631261_at
Accessions : protein= NP_572773;, nucleotide= NM_132545;
FlyMine data for FBgn0030360.
BDGP gene expression has embryonic in situ data for CG1806: 13 pix of staining in 8 body parts.
VDRC has 4 RNAi stocks for FBgn0030360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.30Down
Head41 ± 34 of 4 2.10Up
Eye94 ± 34 of 4 4.73Up
Thoracicoabdominal ganglion9 ± 03 of 4 0.50Down
Salivary gland161 ± 84 of 4 8.13Up
Crop108 ± 24 of 4 5.50Up
Midgut18 ± 04 of 4 0.90None
Tubule18 ± 23 of 4 0.90None
Hindgut49 ± 24 of 4 2.50Up
Heart14 ± 24 of 4 0.75None
Fat body15 ± 14 of 4 0.77None
Ovary12 ± 14 of 4 0.60None
Testis16 ± 14 of 4 0.80None
Male accessory glands69 ± 44 of 4 3.50Up
Virgin spermatheca74 ± 44 of 4 3.74Up
Mated spermatheca98 ± 104 of 4 4.96Up
Adult carcass50 ± 64 of 4 2.50Up
Larval CNS36 ± 44 of 4 1.84Up
Larval Salivary gland25 ± 14 of 4 1.26None
Larval midgut21 ± 43 of 4 1.09None
Larval tubule42 ± 34 of 4 2.20Up
Larval hindgut29 ± 24 of 4 1.50Up
Larval fat body7 ± 21 of 4 0.40Down
Larval trachea76 ± 84 of 4 3.83Up
Larval carcass45 ± 24 of 4 2.29Up
S2 cells (growing)5 ± 11 of 4 0.30Down
Whole fly19 ± 24 of 4

Looking for FBgn0030360. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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