Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030362 through 18771 annotations produced 3 hits



regucalcin (regucalcin):

Annotation Number : HDC18536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030362
Gbrowse : chrX:11908287-11908559 (+) // 93.79 //
Probeset : 1629430_s_at
Accessions : protein= NP_572775; /// NP_727586; /// NP_727587; /// NP_727588;, nucleotide= NM_132547; /// NM_167314; /// NM_167315; /// NM_167316;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030362.
TRiP has 1 RNAi stocks for FBgn0030362 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 ± 184 of 4 1.60None
Head720 ± 1664 of 4 5.10Up
Eye161 ± 224 of 4 1.13None
Thoracicoabdominal ganglion53 ± 44 of 4 0.40Down
Salivary gland18 ± 43 of 4 0.13Down
Crop18 ± 24 of 4 0.10Down
Midgut203 ± 94 of 4 1.40None
Tubule9 ± 12 of 4 0.10Down
Hindgut26 ± 14 of 4 0.20Down
Heart2823 ± 1474 of 419.79Up
Fat body514 ± 1384 of 4 3.60Up
Ovary3 ± 00 of 4 0.00Down
Testis195 ± 154 of 4 1.40None
Male accessory glands21 ± 42 of 4 0.10Down
Virgin spermatheca7 ± 10 of 4 0.05Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass645 ± 644 of 4 4.50Up
Larval CNS6 ± 24 of 4 0.05Down
Larval Salivary gland170 ± 134 of 4 1.19None
Larval midgut118 ± 114 of 4 0.83None
Larval tubule577 ± 194 of 4 4.00Up
Larval hindgut74 ± 154 of 4 0.52None
Larval fat body3170 ± 4294 of 422.20Up
Larval trachea413 ± 1014 of 4 2.90Up
Larval carcass492 ± 424 of 4 3.45Up
S2 cells (growing)573 ± 154 of 4 4.02Up
Whole fly142 ± 244 of 4



regucalcin (regucalcin):

Annotation Number : CG1803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030362
Gbrowse : chrX:11906466-11911091 (+) // 100.0 //
Probeset : 1629889_s_at
Accessions : protein= NP_572775; /// NP_727586; /// NP_727587; /// NP_727588;, nucleotide= NM_132547; /// NM_167314; /// NM_167315; /// NM_167316;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004801 // transaldolase activity // inferred f
FlyMine data for FBgn0030362.
BioGrid reports that CG1803 interacts with CG4769 CG8948 CG4878 .
TRiP has 1 RNAi stocks for FBgn0030362 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain770 ± 294 of 4 1.50Up
Head1806 ± 854 of 4 3.60Up
Eye577 ± 494 of 4 1.15None
Thoracicoabdominal ganglion535 ± 264 of 4 1.10None
Salivary gland473 ± 64 of 4 0.94None
Crop221 ± 94 of 4 0.40Down
Midgut336 ± 194 of 4 0.70Down
Tubule729 ± 554 of 4 1.40Up
Hindgut275 ± 94 of 4 0.50Down
Heart3911 ± 1594 of 4 7.77Up
Fat body1659 ± 2694 of 4 3.30Up
Ovary151 ± 114 of 4 0.30Down
Testis698 ± 154 of 4 1.40Up
Male accessory glands5474 ± 1544 of 410.90Up
Virgin spermatheca853 ± 1254 of 4 1.69None
Mated spermatheca720 ± 804 of 4 1.43None
Adult carcass1897 ± 244 of 4 3.80Up
Larval CNS159 ± 214 of 4 0.32Down
Larval Salivary gland610 ± 244 of 4 1.21Up
Larval midgut537 ± 744 of 4 1.07None
Larval tubule1462 ± 394 of 4 2.90Up
Larval hindgut557 ± 804 of 4 1.11None
Larval fat body7380 ± 8124 of 414.70Up
Larval trachea737 ± 1844 of 4 1.47None
Larval carcass1866 ± 1304 of 4 3.71Up
S2 cells (growing)1625 ± 74 of 4 3.23Up
Whole fly503 ± 164 of 4



regucalcin (regucalcin):

Annotation Number : HDC18536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030362
Gbrowse : chrX:11908287-11908559 (+) // 93.79 //
Probeset : 1638249_at
Accessions : protein= NP_572775; /// NP_727586; /// NP_727587; /// NP_727588;, nucleotide= NM_132547; /// NM_167314; /// NM_167315; /// NM_167316;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030362.
TRiP has 1 RNAi stocks for FBgn0030362 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 01 of 4 1.70None
Head4 ± 10 of 4 0.60None
Eye6 ± 20 of 4 1.00None
Thoracicoabdominal ganglion14 ± 13 of 4 2.10Up
Salivary gland16 ± 41 of 4 2.53None
Crop9 ± 20 of 4 1.40None
Midgut12 ± 11 of 4 1.80None
Tubule9 ± 00 of 4 1.50Up
Hindgut8 ± 12 of 4 1.30None
Heart3 ± 00 of 4 0.56None
Fat body8 ± 30 of 4 1.23None
Ovary4 ± 11 of 4 0.60None
Testis5 ± 10 of 4 0.80None
Male accessory glands14 ± 30 of 4 2.20None
Virgin spermatheca6 ± 10 of 4 1.03None
Mated spermatheca10 ± 00 of 4 1.59None
Adult carcass15 ± 30 of 4 2.30None
Larval CNS7 ± 22 of 4 1.11None
Larval Salivary gland14 ± 22 of 4 2.14None
Larval midgut10 ± 10 of 4 1.52None
Larval tubule10 ± 11 of 4 1.60None
Larval hindgut6 ± 00 of 4 1.03None
Larval fat body6 ± 10 of 4 0.90None
Larval trachea8 ± 31 of 4 1.28None
Larval carcass12 ± 12 of 4 1.84None
S2 cells (growing)10 ± 11 of 4 1.66None
Whole fly6 ± 10 of 4

Looking for FBgn0030362. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime