Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030370 through 18771 annotations produced 1 hits


(CG1950):

Annotation Number : CG1950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030370
Gbrowse : chrX:11949370-11950668 (-) // 100.0 //
Probeset : 1634407_at
Accessions : protein= NP_572781;, nucleotide= NM_132553;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0030370.
BDGP gene expression has embryonic in situ data for CG1950: 4 pix of staining in 1 body parts.
BioGrid reports that CG1950 interacts with CG9878 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland4 ± 20 of 4 0.14Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.07Down
Fat body2 ± 10 of 4 0.07Down
Ovary2 ± 10 of 4 0.10Down
Testis466 ± 144 of 415.00Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut5 ± 10 of 4 0.18Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.10Down
Larval fat body58 ± 373 of 4 1.90None
Larval trachea4 ± 20 of 4 0.14Down
Larval carcass3 ± 00 of 4 0.10Down
S2 cells (growing)4 ± 00 of 4 0.13Down
Whole fly31 ± 24 of 4

Looking for FBgn0030370. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime