FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030373 through 18771 annotations produced 1 hits

(CG12721):

Annotation Number : CG12721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030373
Gbrowse : chrX:11966036-11966848 (-) // 100.0 //
Probeset : 1634255_at
Accessions : protein= NP_572784;, nucleotide= NM_132556;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030373.
BDGP gene expression has embryonic in situ data for CG12721: 4 pix of staining in 1 body parts.
BioGrid reports that CG12721 interacts with CG6814 CG6840 CG9106 CG15631 CG17494 CG1792 CG3052 CG32490 CG5271 CG6457 CG8860 CG8862 .
VDRC has 3 RNAi stocks for FBgn0030373 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	0.10	Down
Head	6 ± 2	0 of 4	0.20	Down
Eye	5 ± 1	3 of 4	0.13	Down
Thoracicoabdominal ganglion	5 ± 2	0 of 4	0.10	Down
Salivary gland	5 ± 3	0 of 4	0.15	Down
Crop	6 ± 0	1 of 4	0.20	Down
Midgut	4 ± 1	0 of 4	0.10	Down
Tubule	6 ± 1	0 of 4	0.20	Down
Hindgut	10 ± 1	2 of 4	0.30	Down
Heart	12 ± 1	4 of 4	0.32	Down
Fat body	22 ± 14	2 of 4	0.56	None
Ovary	75 ± 4	4 of 4	1.90	Up
Testis	3 ± 0	0 of 4	0.10	Down
Male accessory glands	7 ± 2	0 of 4	0.20	Down
Virgin spermatheca	11 ± 1	0 of 4	0.29	Down
Mated spermatheca	8 ± 2	0 of 4	0.20	Down
Adult carcass	13 ± 3	0 of 4	0.30	Down
Larval CNS	17 ± 6	3 of 4	0.45	Down
Larval Salivary gland	9 ± 1	1 of 4	0.24	Down
Larval midgut	5 ± 1	0 of 4	0.13	Down
Larval tubule	5 ± 0	0 of 4	0.10	Down
Larval hindgut	15 ± 2	3 of 4	0.39	Down
Larval fat body	9 ± 1	0 of 4	0.20	Down
Larval trachea	5 ± 1	1 of 4	0.15	Down
Larval carcass	10 ± 1	1 of 4	0.27	Down
S2 cells (growing)	178 ± 2	4 of 4	4.50	Up
Whole fly	39 ± 2	4 of 4

Looking for FBgn0030373. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720