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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030377 through 18771 annotations produced 1 hits



(CG1924):

Annotation Number : CG1924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030377
Gbrowse : chrX:12070927-12072640 (-) // 100.0 //
Probeset : 1626923_at
Accessions : protein= NP_572788;, nucleotide= NM_132560;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0030377.
VDRC has 3 RNAi stocks for FBgn0030377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head2 10 of 4 0.70None
Eye2 10 of 4 0.55None
Thoracicoabdominal ganglion6 01 of 4 1.50None
Salivary gland4 10 of 4 0.98None
Crop5 11 of 4 1.30None
Midgut3 10 of 4 0.90None
Tubule6 01 of 4 1.50Up
Hindgut3 10 of 4 0.90None
Heart1 00 of 4 0.38None
Fat body6 12 of 4 1.55None
Ovary2 00 of 4 0.50None
Testis48 14 of 411.50Up
Male accessory glands8 00 of 4 1.90Up
Virgin spermatheca3 01 of 4 0.75None
Mated spermatheca4 11 of 4 1.17None
Adult carcass7 20 of 4 1.90None
Larval CNS4 13 of 4 1.04None
Larval Salivary gland10 00 of 4 2.44Up
Larval midgut4 20 of 4 1.05None
Larval tubule4 10 of 4 1.20None
Larval hindgut5 11 of 4 1.22None
Larval fat body13 42 of 4 3.20None
Larval trachea3 10 of 4 0.87None
Larval carcass4 00 of 4 1.07None
S2 cells (growing)6 02 of 4 1.51None
Whole fly4 00 of 4

Looking for FBgn0030377. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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