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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030384 through 18771 annotations produced 1 hits


CKIa-like (CG2577):

Annotation Number : CG2577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030384
Gbrowse : chrX:12267243-12268484 (+) // 100.0 //
Probeset : 1640211_at
Accessions : protein= NP_572794;, nucleotide= NM_132566;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0030384.
BDGP gene expression has embryonic in situ data for CG2577: 2 pix of staining in 1 body parts.
Homophila reports that CG2577 is a close match (5e-38) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
TRiP has 1 RNAi stocks for FBgn0030384 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030384 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland12 ± 40 of 4 0.59None
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 20 of 4 0.20Down
Heart1 ± 00 of 4 0.08Down
Fat body9 ± 20 of 4 0.42Down
Ovary1 ± 10 of 4 0.10Down
Testis306 ± 34 of 414.10Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca4 ± 10 of 4 0.20Down
Adult carcass6 ± 20 of 4 0.30Down
Larval CNS3 ± 20 of 4 0.14Down
Larval Salivary gland5 ± 10 of 4 0.24Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.21Down
Larval fat body28 ± 103 of 4 1.30None
Larval trachea3 ± 30 of 4 0.15Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)2 ± 10 of 4 0.12Down
Whole fly21 ± 14 of 4

Looking for FBgn0030384. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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