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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030391 through 18771 annotations produced 1 hits



Rab40 (Rab40):

Annotation Number : CG1900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030391
Gbrowse : chrX:12353826-12357141 (-) // 99.75 //
Probeset : 1628427_a_at
Accessions : protein= NP_572800; /// NP_727611;, nucleotide= NM_132572; /// NM_167323;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0030391.
Homophila reports that CG1900 is a close match (6e-11) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).
BioGrid reports that CG1900 interacts with CG9291 .
TRiP has 1 RNAi stocks for FBgn0030391 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 44 of 4 1.10None
Head98 114 of 4 0.90None
Eye111 44 of 4 0.98None
Thoracicoabdominal ganglion144 64 of 4 1.30Up
Salivary gland166 54 of 4 1.47Up
Crop191 44 of 4 1.70Up
Midgut75 54 of 4 0.70Down
Tubule63 34 of 4 0.60Down
Hindgut110 74 of 4 1.00None
Heart94 64 of 4 0.83None
Fat body112 84 of 4 0.99None
Ovary249 84 of 4 2.20Up
Testis34 24 of 4 0.30Down
Male accessory glands123 114 of 4 1.10None
Virgin spermatheca59 54 of 4 0.52Down
Mated spermatheca85 94 of 4 0.75Down
Adult carcass126 84 of 4 1.10None
Larval CNS180 84 of 4 1.59Up
Larval Salivary gland99 34 of 4 0.87None
Larval midgut91 84 of 4 0.81None
Larval tubule119 54 of 4 1.00None
Larval hindgut149 64 of 4 1.31Up
Larval fat body55 44 of 4 0.50Down
Larval trachea132 214 of 4 1.16None
Larval carcass122 94 of 4 1.07None
S2 cells (growing)115 54 of 4 1.01None
Whole fly113 54 of 4

Looking for FBgn0030391. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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