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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030395 through 18771 annotations produced 1 hits



(CG15730):

Annotation Number : CG15730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030395
Gbrowse : chrX:12388426-12390630 (-) // 100.0 //
Probeset : 1625536_at
Accessions : protein= NP_572804;, nucleotide= NM_132576;
FlyMine data for FBgn0030395.
Homophila reports that CG15730 is a close match (9e-14) to human gene BBS13;MKS;MKS1 (NP_060247), a gene associated with Bardet-Biedl syndrome 13, 209900 (3);Meckel syndrome, type 1, 249000 (3).
VDRC has 2 RNAi stocks for FBgn0030395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.90None
Head6 10 of 4 1.70None
Eye1 00 of 4 0.48None
Thoracicoabdominal ganglion6 01 of 4 1.90None
Salivary gland9 30 of 4 2.79None
Crop7 01 of 4 2.20Up
Midgut8 00 of 4 2.50Up
Tubule6 10 of 4 1.90Up
Hindgut6 11 of 4 2.00None
Heart1 00 of 4 0.42None
Fat body7 51 of 4 2.03None
Ovary6 02 of 4 1.80None
Testis16 14 of 4 4.60Up
Male accessory glands9 31 of 4 2.80None
Virgin spermatheca6 11 of 4 1.91None
Mated spermatheca6 10 of 4 1.77None
Adult carcass9 20 of 4 2.80None
Larval CNS4 01 of 4 1.40None
Larval Salivary gland8 03 of 4 2.32Up
Larval midgut9 02 of 4 2.72Up
Larval tubule5 11 of 4 1.60None
Larval hindgut4 10 of 4 1.36None
Larval fat body17 33 of 4 5.00Up
Larval trachea3 10 of 4 0.88None
Larval carcass6 00 of 4 1.77None
S2 cells (growing)6 11 of 4 1.72None
Whole fly3 11 of 4

Looking for FBgn0030395. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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