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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030400 through 18771 annotations produced 1 hits


Annotation Number : CG11138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030400
Gbrowse : chrX:12465242-12477215 (-) // 100.0 //
Probeset : 1636152_a_at
Accessions : protein= NP_001138192; /// NP_572809; /// NP_727620;, nucleotide= NM_001144720; /// NM_132581; /// NM_167325;
FlyMine data for FBgn0030400.
BioGrid reports that CG11138 interacts with CG11194 CG11489 CG11505 CG11581 CG12548 CG14119 CG14543 CG14634 CG1472 CG15109 CG15422 CG15753 CG15865 CG17233 CG17666 CG1856 CG1921 CG2540 CG2865 CG31000 CG31211 CG3187 CG3225 CG32264 CG32369 CG32491 CG33017 CG33141 CG3780 CG3891 CG4220 CG4491 CG5380 CG5494 CG6745 CG7056 CG7080 CG7104 CG7570 CG7967 CG8368 CG8556 CG8815 CG8831 CG9238 CG9986 CG1244 CG6923 CG1133 CG1630 .
VDRC has 5 RNAi stocks for FBgn0030400 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 114 of 4 2.40Up
Head60 64 of 4 0.90None
Eye30 24 of 4 0.48Down
Thoracicoabdominal ganglion92 54 of 4 1.40Up
Salivary gland46 14 of 4 0.73None
Crop159 74 of 4 2.50Up
Midgut76 44 of 4 1.20None
Tubule62 44 of 4 1.00None
Hindgut116 34 of 4 1.80Up
Heart30 34 of 4 0.48Down
Fat body119 114 of 4 1.87Up
Ovary223 124 of 4 3.50Up
Testis16 24 of 4 0.30Down
Male accessory glands37 94 of 4 0.60None
Virgin spermatheca55 34 of 4 0.87None
Mated spermatheca68 104 of 4 1.08None
Adult carcass35 34 of 4 0.60Down
Larval CNS277 234 of 4 4.35Up
Larval Salivary gland50 44 of 4 0.79None
Larval midgut62 24 of 4 0.97None
Larval tubule114 34 of 4 1.80Up
Larval hindgut90 54 of 4 1.41Up
Larval fat body33 34 of 4 0.50Down
Larval trachea59 94 of 4 0.93None
Larval carcass46 14 of 4 0.74None
S2 cells (growing)75 74 of 4 1.18None
Whole fly63 64 of 4

Looking for FBgn0030400. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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