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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030403 through 18771 annotations produced 1 hits



(CG1824):

Annotation Number : CG1824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030403
Gbrowse : chrX:12486581-12489672 (-) // 100.0 //
Probeset : 1625618_at
Accessions : protein= NP_572810;, nucleotide= NM_132582;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016021 // integral to me
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0030403.
BDGP gene expression has embryonic in situ data for CG1824: 4 pix of staining in 1 body parts.
Homophila reports that CG1824 is a close match (1e-11) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
VDRC has 2 RNAi stocks for FBgn0030403 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 ± 34 of 4 1.20Up
Head75 ± 34 of 4 0.80None
Eye87 ± 34 of 4 0.94None
Thoracicoabdominal ganglion119 ± 54 of 4 1.30Up
Salivary gland167 ± 74 of 4 1.81Up
Crop90 ± 34 of 4 1.00None
Midgut174 ± 24 of 4 1.90Up
Tubule149 ± 34 of 4 1.60Up
Hindgut139 ± 34 of 4 1.50Up
Heart100 ± 24 of 4 1.08None
Fat body131 ± 114 of 4 1.42Up
Ovary103 ± 24 of 4 1.10None
Testis35 ± 14 of 4 0.40Down
Male accessory glands70 ± 64 of 4 0.80Down
Virgin spermatheca113 ± 14 of 4 1.22Up
Mated spermatheca128 ± 64 of 4 1.39Up
Adult carcass111 ± 54 of 4 1.20None
Larval CNS95 ± 54 of 4 1.03None
Larval Salivary gland112 ± 34 of 4 1.21Up
Larval midgut199 ± 194 of 4 2.16Up
Larval tubule44 ± 44 of 4 0.50Down
Larval hindgut158 ± 124 of 4 1.71Up
Larval fat body26 ± 34 of 4 0.30Down
Larval trachea67 ± 84 of 4 0.73Down
Larval carcass64 ± 34 of 4 0.70Down
S2 cells (growing)100 ± 24 of 4 1.09None
Whole fly92 ± 54 of 4

Looking for FBgn0030403. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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