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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030407 through 18771 annotations produced 1 hits



(CG2543):

Annotation Number : CG2543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030407
Gbrowse : chrX:12505946-12509563 (+) // 100.0 //
Probeset : 1626223_at
Accessions : protein= NP_572814;, nucleotide= NM_132586;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : 0004326 // tetrahydrofolylpolyglutamate synthase activity // inferred from sequence or structural similarity /// 0004326
FlyMine data for FBgn0030407.
VDRC has 2 RNAi stocks for FBgn0030407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 03 of 4 0.80None
Head46 34 of 4 2.20Up
Eye64 54 of 4 3.07Up
Thoracicoabdominal ganglion21 14 of 4 1.00None
Salivary gland30 71 of 4 1.47None
Crop13 12 of 4 0.60Down
Midgut55 44 of 4 2.70Up
Tubule13 12 of 4 0.60Down
Hindgut18 31 of 4 0.90None
Heart26 24 of 4 1.27None
Fat body56 114 of 4 2.68Up
Ovary27 14 of 4 1.30Up
Testis16 14 of 4 0.80Down
Male accessory glands39 14 of 4 1.90Up
Virgin spermatheca45 24 of 4 2.17Up
Mated spermatheca46 34 of 4 2.20Up
Adult carcass33 34 of 4 1.60Up
Larval CNS21 34 of 4 1.00None
Larval Salivary gland24 12 of 4 1.15None
Larval midgut73 44 of 4 3.49Up
Larval tubule13 10 of 4 0.60Down
Larval hindgut27 24 of 4 1.32None
Larval fat body29 32 of 4 1.40None
Larval trachea18 74 of 4 0.88None
Larval carcass23 21 of 4 1.13None
S2 cells (growing)25 24 of 4 1.21None
Whole fly21 14 of 4

Looking for FBgn0030407. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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