Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030417 through 18771 annotations produced 1 hits



(CG15725):

Annotation Number : CG15725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030417
Gbrowse : chrX:12600230-12602603 (+) // 100.0 //
Probeset : 1635339_at
Accessions : protein= NP_572823;, nucleotide= NM_132595;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0030417.
VDRC has 2 RNAi stocks for FBgn0030417 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 4.20Up
Head4 ± 10 of 4 0.90None
Eye4 ± 10 of 4 0.90None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland8 ± 30 of 4 1.69None
Crop4 ± 10 of 4 0.90None
Midgut4 ± 10 of 4 1.00None
Tubule1 ± 00 of 4 0.40Down
Hindgut5 ± 00 of 4 1.20None
Heart5 ± 11 of 4 1.14None
Fat body7 ± 40 of 4 1.52None
Ovary2 ± 00 of 4 0.60None
Testis1 ± 00 of 4 0.40None
Male accessory glands2 ± 10 of 4 0.60None
Virgin spermatheca2 ± 00 of 4 0.46None
Mated spermatheca4 ± 10 of 4 0.85None
Adult carcass2 ± 10 of 4 0.60None
Larval CNS12 ± 24 of 4 2.52Up
Larval Salivary gland5 ± 10 of 4 1.12None
Larval midgut5 ± 10 of 4 1.04None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut5 ± 00 of 4 1.07None
Larval fat body10 ± 21 of 4 2.20None
Larval trachea8 ± 41 of 4 1.81None
Larval carcass6 ± 10 of 4 1.24None
S2 cells (growing)3 ± 10 of 4 0.68None
Whole fly4 ± 10 of 4

Looking for FBgn0030417. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime