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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030418 through 18771 annotations produced 2 hits



(CG4004):

Annotation Number : CG4004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030418
Gbrowse : chrX:12638498-12643818 (+) // 100.0 //
Probeset : 1637651_at
Accessions : protein= NP_572824; /// NP_727638;, nucleotide= NM_132596; /// NM_167336;
FlyMine data for FBgn0030418.
BDGP gene expression has embryonic in situ data for CG4004: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030418 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 33 of 4 7.90Up
Head3 10 of 4 1.50None
Eye3 11 of 4 1.17None
Thoracicoabdominal ganglion16 11 of 4 6.20Up
Salivary gland7 20 of 4 2.77None
Crop5 10 of 4 2.20None
Midgut1 00 of 4 0.70None
Tubule7 00 of 4 2.90Up
Hindgut5 10 of 4 2.10None
Heart2 00 of 4 0.96None
Fat body7 20 of 4 2.81Up
Ovary1 10 of 4 0.70None
Testis1 00 of 4 0.70None
Male accessory glands1 00 of 4 0.70None
Virgin spermatheca4 20 of 4 1.75None
Mated spermatheca4 10 of 4 1.62None
Adult carcass6 20 of 4 2.40None
Larval CNS16 33 of 4 6.33Up
Larval Salivary gland11 20 of 4 4.40Up
Larval midgut4 10 of 4 1.79None
Larval tubule5 20 of 4 2.10None
Larval hindgut6 11 of 4 2.48None
Larval fat body7 20 of 4 2.70None
Larval trachea2 10 of 4 0.76None
Larval carcass8 10 of 4 3.36Up
S2 cells (growing)8 10 of 4 3.42Up
Whole fly2 10 of 4



(CG4004):

Annotation Number : CG4004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030418
Gbrowse : chrX:12639390-12641787 (+) // 99.5 //
Probeset : 1638751_a_at
Accessions : protein= NP_572824; /// NP_727638;, nucleotide= NM_132596; /// NM_167336;
FlyMine data for FBgn0030418.
BDGP gene expression has embryonic in situ data for CG4004: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030418 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 2.50Up
Head30 24 of 4 1.10None
Eye40 54 of 4 1.45None
Thoracicoabdominal ganglion46 44 of 4 1.70Up
Salivary gland86 44 of 4 3.14Up
Crop42 34 of 4 1.50None
Midgut35 44 of 4 1.30None
Tubule83 134 of 4 3.00Up
Hindgut36 34 of 4 1.30None
Heart28 24 of 4 1.03None
Fat body34 44 of 4 1.25None
Ovary39 34 of 4 1.40None
Testis11 22 of 4 0.40None
Male accessory glands27 34 of 4 1.00None
Virgin spermatheca66 24 of 4 2.41Up
Mated spermatheca69 64 of 4 2.51Up
Adult carcass27 44 of 4 1.00None
Larval CNS112 144 of 4 4.07Up
Larval Salivary gland79 34 of 4 2.86Up
Larval midgut40 44 of 4 1.46None
Larval tubule59 14 of 4 2.20Up
Larval hindgut50 84 of 4 1.83None
Larval fat body40 34 of 4 1.40None
Larval trachea66 134 of 4 2.40Up
Larval carcass51 104 of 4 1.85None
S2 cells (growing)63 24 of 4 2.30Up
Whole fly27 54 of 4

Looking for FBgn0030418. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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