FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030425 through 18771 annotations produced 1 hits

zinc metalloprotease (CG3775):

Annotation Number : CG3775
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030425
Gbrowse : chrX:12695740-12698267 (+) // 100.0 //
Probeset : 1640399_at
Accessions : protein= NP_572831;, nucleotide= NM_132603;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0030425.
Homophila reports that CG3775 is a close match (5e-19) to human gene HPDR1;HYP;PHEX (NP_000435), a gene associated with Hypophosphatemia, X-linked, 307800 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	4 of 4	0.10	Down
Head	317 ± 31	4 of 4	2.60	Up
Eye	196 ± 32	4 of 4	1.63	None
Thoracicoabdominal ganglion	17 ± 3	4 of 4	0.10	Down
Salivary gland	10 ± 2	2 of 4	0.09	Down
Crop	17 ± 2	4 of 4	0.10	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	14 ± 2	2 of 4	0.10	Down
Hindgut	51 ± 3	4 of 4	0.40	Down
Heart	975 ± 42	4 of 4	8.08	Up
Fat body	1588 ± 117	4 of 4	13.17	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	3 ± 0	1 of 4	0.00	Down
Male accessory glands	5 ± 1	0 of 4	0.00	Down
Virgin spermatheca	2135 ± 46	4 of 4	17.70	Up
Mated spermatheca	2012 ± 103	4 of 4	16.68	Up
Adult carcass	577 ± 52	4 of 4	4.80	Up
Larval CNS	1 ± 2	1 of 4	0.02	Down
Larval Salivary gland	24 ± 1	4 of 4	0.20	Down
Larval midgut	3 ± 1	0 of 4	0.03	Down
Larval tubule	5 ± 2	2 of 4	0.00	Down
Larval hindgut	14 ± 2	4 of 4	0.12	Down
Larval fat body	330 ± 32	4 of 4	2.70	Up
Larval trachea	9 ± 5	3 of 4	0.08	Down
Larval carcass	7 ± 0	2 of 4	0.06	Down
S2 cells (growing)	2 ± 0	0 of 4	0.02	Down
Whole fly	120 ± 4	4 of 4

Looking for FBgn0030425. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720