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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030429 through 18771 annotations produced 1 hits



(CG4661):

Annotation Number : CG4661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030429
Gbrowse : chrX:12749790-12751755 (-) // 100.0 //
Probeset : 1630737_at
Accessions : protein= NP_572835;, nucleotide= NM_132607;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0030429.
BioGrid reports that CG4661 interacts with CG7724 .
VDRC has 2 RNAi stocks for FBgn0030429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 0.40Down
Head3 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion8 ± 03 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.11Down
Crop3 ± 11 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.04Down
Fat body7 ± 42 of 4 0.20Down
Ovary0 ± 00 of 4 0.00Down
Testis534 ± 144 of 415.00Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 01 of 4 0.07Down
Mated spermatheca5 ± 00 of 4 0.14Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS5 ± 24 of 4 0.15Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut3 ± 11 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body78 ± 414 of 4 2.20None
Larval trachea3 ± 30 of 4 0.09Down
Larval carcass3 ± 10 of 4 0.10Down
S2 cells (growing)4 ± 01 of 4 0.13Down
Whole fly35 ± 04 of 4

Looking for FBgn0030429. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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