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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030431 through 18771 annotations produced 1 hits



(CG4407):

Annotation Number : CG4407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030431
Gbrowse : chrX:12795387-12797516 (-) // 100.0 //
Probeset : 1637973_a_at
Accessions : protein= NP_572837; /// NP_727648;, nucleotide= NM_132609; /// NM_167342;
Interpro : 0003919 // FMN adenylyltransferase activity // inferred from sequence or structural similarity /// 0003919 // FMN adenyl
FlyMine data for FBgn0030431.
BioGrid reports that CG4407 interacts with CG8120 .
VDRC has 3 RNAi stocks for FBgn0030431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 14 of 4 1.00None
Head113 ± 74 of 4 0.80Down
Eye99 ± 214 of 4 0.68None
Thoracicoabdominal ganglion212 ± 64 of 4 1.50Up
Salivary gland68 ± 63 of 4 0.47Down
Crop185 ± 54 of 4 1.30Up
Midgut157 ± 134 of 4 1.10None
Tubule153 ± 214 of 4 1.10None
Hindgut216 ± 124 of 4 1.50Up
Heart151 ± 74 of 4 1.04None
Fat body161 ± 254 of 4 1.11None
Ovary309 ± 34 of 4 2.10Up
Testis52 ± 34 of 4 0.40Down
Male accessory glands70 ± 34 of 4 0.50Down
Virgin spermatheca115 ± 54 of 4 0.79Down
Mated spermatheca128 ± 54 of 4 0.88None
Adult carcass181 ± 144 of 4 1.20None
Larval CNS76 ± 124 of 4 0.52Down
Larval Salivary gland49 ± 14 of 4 0.34Down
Larval midgut92 ± 84 of 4 0.63Down
Larval tubule73 ± 04 of 4 0.50Down
Larval hindgut99 ± 74 of 4 0.68Down
Larval fat body71 ± 94 of 4 0.50Down
Larval trachea101 ± 144 of 4 0.70Down
Larval carcass86 ± 44 of 4 0.59Down
S2 cells (growing)109 ± 74 of 4 0.75Down
Whole fly145 ± 74 of 4

Looking for FBgn0030431. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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