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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030434 through 18771 annotations produced 1 hits



(CG4400):

Annotation Number : CG4400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030434
Gbrowse : chrX:12802016-12803631 (-) // 100.0 //
Probeset : 1626810_at
Accessions : protein= NP_572840;, nucleotide= NM_132612;
FlyMine data for FBgn0030434.
BDGP gene expression has embryonic in situ data for CG4400: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030434 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030434 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 ± 54 of 4 1.20Up
Head132 ± 54 of 4 0.70Down
Eye189 ± 84 of 4 1.04None
Thoracicoabdominal ganglion168 ± 34 of 4 0.90None
Salivary gland202 ± 224 of 4 1.12None
Crop138 ± 64 of 4 0.80Down
Midgut72 ± 14 of 4 0.40Down
Tubule69 ± 14 of 4 0.40Down
Hindgut129 ± 14 of 4 0.70Down
Heart90 ± 34 of 4 0.50Down
Fat body61 ± 54 of 4 0.34Down
Ovary436 ± 114 of 4 2.40Up
Testis101 ± 24 of 4 0.60Down
Male accessory glands164 ± 144 of 4 0.90None
Virgin spermatheca90 ± 34 of 4 0.50Down
Mated spermatheca106 ± 134 of 4 0.58Down
Adult carcass127 ± 14 of 4 0.70Down
Larval CNS254 ± 144 of 4 1.40Up
Larval Salivary gland219 ± 104 of 4 1.21Up
Larval midgut64 ± 24 of 4 0.35Down
Larval tubule105 ± 14 of 4 0.60Down
Larval hindgut117 ± 14 of 4 0.65Down
Larval fat body92 ± 64 of 4 0.50Down
Larval trachea154 ± 64 of 4 0.85Down
Larval carcass119 ± 34 of 4 0.66Down
S2 cells (growing)146 ± 14 of 4 0.81Down
Whole fly181 ± 44 of 4

Looking for FBgn0030434. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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