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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030437 through 18771 annotations produced 1 hits



(CG4395):

Annotation Number : CG4395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030437
Gbrowse : chrX:12845336-12848572 (-) // 100.0 //
Probeset : 1639301_at
Accessions : protein= NP_572843;, nucleotide= NM_132615;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030437.
Homophila reports that CG4395 is a close match (5e-17) to human gene PTHR;PTHR1 (NP_000307), a gene associated with Chondrodysplasia, Blomstrand type, 215045 (3);Eiken syndrome, 600002 (3);Enchondromatosis, Ollier type, 166000 (3);Metaphyseal chondrodysplasia, Murk Jansen type, 156400 (3).
BioGrid reports that CG4395 interacts with CG9015 .
TRiP has 1 RNAi stocks for FBgn0030437 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 2.70Up
Head6 ± 20 of 4 1.20None
Eye2 ± 10 of 4 0.55None
Thoracicoabdominal ganglion5 ± 21 of 4 1.00None
Salivary gland5 ± 20 of 4 1.07None
Crop5 ± 10 of 4 1.00None
Midgut9 ± 10 of 4 1.70None
Tubule3 ± 00 of 4 0.70Down
Hindgut7 ± 20 of 4 1.50None
Heart1 ± 00 of 4 0.33None
Fat body8 ± 31 of 4 1.54None
Ovary2 ± 00 of 4 0.40None
Testis3 ± 10 of 4 0.70None
Male accessory glands10 ± 12 of 4 2.00None
Virgin spermatheca5 ± 00 of 4 1.14None
Mated spermatheca3 ± 10 of 4 0.67None
Adult carcass8 ± 40 of 4 1.60None
Larval CNS9 ± 13 of 4 1.87None
Larval Salivary gland5 ± 20 of 4 1.13None
Larval midgut9 ± 11 of 4 1.86None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut4 ± 00 of 4 0.77None
Larval fat body7 ± 20 of 4 1.40None
Larval trachea1 ± 20 of 4 0.38None
Larval carcass5 ± 10 of 4 1.08None
S2 cells (growing)2 ± 10 of 4 0.57None
Whole fly5 ± 21 of 4

Looking for FBgn0030437. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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