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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030438 through 18771 annotations produced 1 hits


(CG15721):

Annotation Number : CG15721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030438
Gbrowse : chrX:12864760-12868521 (+) // 100.0 //
Probeset : 1633928_at
Accessions : protein= NP_572844;, nucleotide= NM_132616;
FlyMine data for FBgn0030438.
TRiP has 1 RNAi stocks for FBgn0030438 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye4 ± 11 of 4 0.03Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland17 ± 40 of 4 0.14Down
Crop6 ± 20 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 21 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body13 ± 14 of 4 0.10Down
Ovary296 ± 274 of 4 2.30Up
Testis4 ± 10 of 4 0.00Down
Male accessory glands10 ± 20 of 4 0.10Down
Virgin spermatheca11 ± 02 of 4 0.09Down
Mated spermatheca11 ± 22 of 4 0.09Down
Adult carcass10 ± 20 of 4 0.10Down
Larval CNS7 ± 23 of 4 0.06Down
Larval Salivary gland8 ± 20 of 4 0.07Down
Larval midgut6 ± 11 of 4 0.05Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut5 ± 01 of 4 0.04Down
Larval fat body12 ± 31 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.02Down
Larval carcass6 ± 00 of 4 0.05Down
S2 cells (growing)6 ± 10 of 4 0.05Down
Whole fly128 ± 274 of 4

Looking for FBgn0030438. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime