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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030439 through 18771 annotations produced 1 hits



(CG12716):

Annotation Number : CG12716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030439
Gbrowse : chrX:12868817-12870264 (-) // 100.0 //
Probeset : 1630441_at
Accessions : protein= NP_572845;, nucleotide= NM_132617;
FlyMine data for FBgn0030439.
VDRC has 2 RNAi stocks for FBgn0030439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 14 of 4 0.40None
Head7 03 of 4 0.20None
Eye3 00 of 4 0.08Down
Thoracicoabdominal ganglion8 12 of 4 0.20None
Salivary gland12 11 of 4 0.33None
Crop9 14 of 4 0.30None
Midgut5 10 of 4 0.10Down
Tubule5 00 of 4 0.10Down
Hindgut7 00 of 4 0.20None
Heart3 10 of 4 0.09Down
Fat body15 73 of 4 0.42None
Ovary133 204 of 4 3.60Up
Testis4 01 of 4 0.10Down
Male accessory glands9 12 of 4 0.30None
Virgin spermatheca10 04 of 4 0.27None
Mated spermatheca17 53 of 4 0.47None
Adult carcass10 11 of 4 0.30None
Larval CNS6 14 of 4 0.17None
Larval Salivary gland0 00 of 4 0.02Down
Larval midgut5 10 of 4 0.15Down
Larval tubule6 21 of 4 0.20Down
Larval hindgut6 14 of 4 0.19None
Larval fat body5 30 of 4 0.10Down
Larval trachea1 10 of 4 0.05Down
Larval carcass9 02 of 4 0.26None
S2 cells (growing)2 00 of 4 0.07Down
Whole fly36 94 of 4

Looking for FBgn0030439. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime