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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030447 through 18771 annotations produced 1 hits



(CG2200):

Annotation Number : CG2200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030447
Gbrowse : chrX:12988546-12989770 (+) // 100.0 //
Probeset : 1633001_at
Accessions : protein= NP_572852;, nucleotide= NM_132624;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from elec
FlyMine data for FBgn0030447.
BioGrid reports that CG2200 interacts with CG3308 .
VDRC has 2 RNAi stocks for FBgn0030447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 ± 44 of 4 0.60Down
Head192 ± 114 of 4 1.10None
Eye194 ± 124 of 4 1.10None
Thoracicoabdominal ganglion103 ± 34 of 4 0.60Down
Salivary gland462 ± 324 of 4 2.61Up
Crop248 ± 214 of 4 1.40Up
Midgut388 ± 234 of 4 2.20Up
Tubule258 ± 264 of 4 1.50Up
Hindgut183 ± 24 of 4 1.00None
Heart234 ± 94 of 4 1.32Up
Fat body233 ± 144 of 4 1.31Up
Ovary227 ± 74 of 4 1.30Up
Testis54 ± 44 of 4 0.30Down
Male accessory glands483 ± 64 of 4 2.70Up
Virgin spermatheca256 ± 144 of 4 1.44Up
Mated spermatheca293 ± 204 of 4 1.65Up
Adult carcass189 ± 74 of 4 1.10None
Larval CNS98 ± 54 of 4 0.55Down
Larval Salivary gland328 ± 174 of 4 1.85Up
Larval midgut389 ± 394 of 4 2.19Up
Larval tubule416 ± 104 of 4 2.30Up
Larval hindgut214 ± 94 of 4 1.21Up
Larval fat body386 ± 444 of 4 2.20Up
Larval trachea292 ± 144 of 4 1.65Up
Larval carcass258 ± 44 of 4 1.46Up
S2 cells (growing)135 ± 24 of 4 0.76Down
Whole fly177 ± 104 of 4

Looking for FBgn0030447. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime