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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030449 through 18771 annotations produced 1 hits



Ferritin 3 heavy chain homologue (Fer3HCH):

Annotation Number : CG4349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030449
Gbrowse : chrX:13001506-13002129 (-) // 100.0 //
Probeset : 1631593_at
Accessions : protein= NP_572854;, nucleotide= NM_132626;
Pathway : 0008043 // intracellular ferritin complex // inferred from sequence or structural similarity
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0030449.
Homophila reports that CG4349 is a close match (5e-25) to human gene FTL (NP_000137), a gene associated with Basal ganglia disease, adult-onset, 606159 (3);Hyperferritinemia-cataract syndrome, 600886 (3).
BioGrid reports that CG4349 interacts with CG9283 CG4349 CG33522 .
VDRC has 1 RNAi stocks for FBgn0030449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20Down
Head7 ± 00 of 4 0.20Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion7 ± 22 of 4 0.20Down
Salivary gland10 ± 30 of 4 0.27Down
Crop6 ± 10 of 4 0.20Down
Midgut8 ± 11 of 4 0.20Down
Tubule6 ± 00 of 4 0.20Down
Hindgut11 ± 03 of 4 0.30Down
Heart6 ± 10 of 4 0.16Down
Fat body12 ± 14 of 4 0.34Down
Ovary3 ± 10 of 4 0.10Down
Testis353 ± 74 of 4 9.50Up
Male accessory glands10 ± 30 of 4 0.30Down
Virgin spermatheca8 ± 00 of 4 0.22Down
Mated spermatheca11 ± 00 of 4 0.30Down
Adult carcass17 ± 21 of 4 0.50Down
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland8 ± 20 of 4 0.24Down
Larval midgut9 ± 00 of 4 0.25Down
Larval tubule8 ± 10 of 4 0.20Down
Larval hindgut6 ± 11 of 4 0.18Down
Larval fat body42 ± 152 of 4 1.20None
Larval trachea7 ± 41 of 4 0.21Down
Larval carcass6 ± 10 of 4 0.16Down
S2 cells (growing)7 ± 11 of 4 0.21Down
Whole fly37 ± 24 of 4

Looking for FBgn0030449. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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