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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030451 through 18771 annotations produced 1 hits


Annotation Number : CG15717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030451
Gbrowse : chrX:13023052-13024324 (+) // 100.0 //
Probeset : 1637798_at
Accessions : protein= NP_572856;, nucleotide= NM_132628;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0030451.
BDGP gene expression has embryonic in situ data for CG15717: 15 pix of staining in 14 body parts.
BioGrid reports that CG15717 interacts with CG8525 CG1836 CG1975 CG5099 CG8292 .
VDRC has 2 RNAi stocks for FBgn0030451 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.10Down
Head190 114 of 4 1.00None
Eye97 214 of 4 0.53Down
Thoracicoabdominal ganglion21 14 of 4 0.10Down
Salivary gland63 24 of 4 0.34Down
Crop125 34 of 4 0.70Down
Midgut155 74 of 4 0.80None
Tubule241 314 of 4 1.30None
Hindgut91 34 of 4 0.50Down
Heart221 54 of 4 1.21None
Fat body530 794 of 4 2.89Up
Ovary299 24 of 4 1.60Up
Testis11 14 of 4 0.10Down
Male accessory glands122 24 of 4 0.70Down
Virgin spermatheca423 184 of 4 2.31Up
Mated spermatheca303 104 of 4 1.65Up
Adult carcass246 194 of 4 1.30None
Larval CNS165 104 of 4 0.90None
Larval Salivary gland380 204 of 4 2.07Up
Larval midgut153 84 of 4 0.84None
Larval tubule147 84 of 4 0.80None
Larval hindgut204 44 of 4 1.11None
Larval fat body456 414 of 4 2.50Up
Larval trachea364 394 of 4 1.98Up
Larval carcass320 254 of 4 1.74Up
S2 cells (growing)324 74 of 4 1.77Up
Whole fly183 184 of 4

Looking for FBgn0030451. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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