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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030456 through 18771 annotations produced 1 hits



(CG4332):

Annotation Number : CG4332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030456
Gbrowse : chrX:13049072-13051402 (+) // 100.0 //
Probeset : 1628123_at
Accessions : protein= NP_572861;, nucleotide= NM_132633;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030456.
BDGP gene expression has embryonic in situ data for CG4332: 4 pix of staining in 1 body parts.
BioGrid reports that CG4332 interacts with CG8795 .
TRiP has 1 RNAi stocks for FBgn0030456 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030456 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 0.30Down
Head81 54 of 4 0.40Down
Eye82 34 of 4 0.43Down
Thoracicoabdominal ganglion49 34 of 4 0.30Down
Salivary gland123 84 of 4 0.64Down
Crop96 44 of 4 0.50Down
Midgut97 24 of 4 0.50Down
Tubule138 84 of 4 0.70Down
Hindgut85 24 of 4 0.40Down
Heart106 34 of 4 0.55Down
Fat body159 214 of 4 0.82Down
Ovary381 34 of 4 2.00Up
Testis61 14 of 4 0.30Down
Male accessory glands353 194 of 4 1.80Up
Virgin spermatheca236 84 of 4 1.22Up
Mated spermatheca301 274 of 4 1.55Up
Adult carcass89 94 of 4 0.50Down
Larval CNS194 134 of 4 1.00None
Larval Salivary gland463 44 of 4 2.39Up
Larval midgut97 34 of 4 0.50Down
Larval tubule137 74 of 4 0.70Down
Larval hindgut180 94 of 4 0.93None
Larval fat body138 84 of 4 0.70Down
Larval trachea264 414 of 4 1.36Up
Larval carcass198 174 of 4 1.02None
S2 cells (growing)136 24 of 4 0.70Down
Whole fly194 34 of 4

Looking for FBgn0030456. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime