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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030460 through 18771 annotations produced 1 hits



(CG2453):

Annotation Number : CG2453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030460
Gbrowse : chrX:13087126-13088406 (-) // 100.0 //
Probeset : 1639328_at
Accessions : protein= NP_572865;, nucleotide= NM_132637;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred
FlyMine data for FBgn0030460.
BioGrid reports that CG2453 interacts with CG4168 .
VDRC has 2 RNAi stocks for FBgn0030460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 14 of 4 0.80None
Head67 34 of 4 0.70Down
Eye72 34 of 4 0.76Down
Thoracicoabdominal ganglion75 74 of 4 0.80None
Salivary gland76 24 of 4 0.80None
Crop84 44 of 4 0.90None
Midgut69 14 of 4 0.70Down
Tubule76 54 of 4 0.80Down
Hindgut91 54 of 4 1.00None
Heart77 14 of 4 0.82None
Fat body78 14 of 4 0.82None
Ovary144 44 of 4 1.50Up
Testis36 24 of 4 0.40Down
Male accessory glands58 14 of 4 0.60Down
Virgin spermatheca141 24 of 4 1.48Up
Mated spermatheca120 44 of 4 1.26Up
Adult carcass83 44 of 4 0.90None
Larval CNS91 134 of 4 0.96None
Larval Salivary gland75 44 of 4 0.79None
Larval midgut57 34 of 4 0.60Down
Larval tubule65 54 of 4 0.70Down
Larval hindgut88 74 of 4 0.92None
Larval fat body45 34 of 4 0.50Down
Larval trachea91 114 of 4 0.96None
Larval carcass82 54 of 4 0.87None
S2 cells (growing)81 34 of 4 0.85None
Whole fly95 64 of 4

Looking for FBgn0030460. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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