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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030466 through 18771 annotations produced 2 hits



(CG15744):

Annotation Number : CT35992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030466
Gbrowse : chrX:13182395-13187911 (+) // 100.0 //
Probeset : 1634342_s_at
Accessions : protein= NP_572870;, nucleotide= NM_132642;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030466.
TRiP has 3 RNAi stocks for FBgn0030466 available for purchase.
VDRC has 4 RNAi stocks for FBgn0030466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 24 of 4 1.30None
Head14 ± 12 of 4 0.80None
Eye8 ± 21 of 4 0.46Down
Thoracicoabdominal ganglion16 ± 23 of 4 0.90None
Salivary gland28 ± 20 of 4 1.51Up
Crop11 ± 10 of 4 0.60Down
Midgut6 ± 10 of 4 0.40Down
Tubule7 ± 00 of 4 0.40Down
Hindgut10 ± 10 of 4 0.60Down
Heart6 ± 12 of 4 0.37Down
Fat body5 ± 30 of 4 0.29Down
Ovary53 ± 34 of 4 2.90Up
Testis12 ± 14 of 4 0.60Down
Male accessory glands16 ± 41 of 4 0.90None
Virgin spermatheca3 ± 10 of 4 0.16Down
Mated spermatheca4 ± 10 of 4 0.25Down
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS40 ± 24 of 4 2.16Up
Larval Salivary gland15 ± 22 of 4 0.84None
Larval midgut5 ± 20 of 4 0.27Down
Larval tubule15 ± 14 of 4 0.80None
Larval hindgut13 ± 22 of 4 0.73None
Larval fat body19 ± 22 of 4 1.00None
Larval trachea10 ± 32 of 4 0.56Down
Larval carcass11 ± 31 of 4 0.64None
S2 cells (growing)39 ± 24 of 4 2.11Up
Whole fly18 ± 22 of 4



(CG15744):

Annotation Number : LD29955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030466
Gbrowse : chrX:13185615-13188469 (+) // 100.0 //
Probeset : 1639266_at
Accessions : protein= NP_572870;, nucleotide= NM_132642;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030466.
TRiP has 3 RNAi stocks for FBgn0030466 available for purchase.
VDRC has 4 RNAi stocks for FBgn0030466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 44 of 4 1.00None
Head40 ± 34 of 4 0.60Down
Eye47 ± 24 of 4 0.71Down
Thoracicoabdominal ganglion56 ± 24 of 4 0.80None
Salivary gland39 ± 44 of 4 0.59Down
Crop36 ± 24 of 4 0.50Down
Midgut31 ± 34 of 4 0.50Down
Tubule41 ± 24 of 4 0.60Down
Hindgut26 ± 13 of 4 0.40Down
Heart27 ± 24 of 4 0.42Down
Fat body27 ± 84 of 4 0.41Down
Ovary282 ± 24 of 4 4.30Up
Testis54 ± 54 of 4 0.80None
Male accessory glands34 ± 44 of 4 0.50Down
Virgin spermatheca28 ± 14 of 4 0.42Down
Mated spermatheca32 ± 44 of 4 0.49Down
Adult carcass21 ± 40 of 4 0.30Down
Larval CNS256 ± 214 of 4 3.85Up
Larval Salivary gland63 ± 44 of 4 0.96None
Larval midgut38 ± 34 of 4 0.58Down
Larval tubule59 ± 34 of 4 0.90None
Larval hindgut40 ± 34 of 4 0.62Down
Larval fat body36 ± 44 of 4 0.50Down
Larval trachea106 ± 84 of 4 1.60Up
Larval carcass47 ± 24 of 4 0.71Down
S2 cells (growing)82 ± 24 of 4 1.24None
Whole fly66 ± 54 of 4

Looking for FBgn0030466. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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