FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030477 through 18771 annotations produced 1 hits

doublesex-Mab related 11E (dmrt11E):

Annotation Number : CG15749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030477
Gbrowse : chrX:13262232-13264366 (+) // 100.0 //
Probeset : 1624940_at
Accessions : protein= NP_511146;, nucleotide= NM_078591;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic ann
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0030477.
BioGrid reports that CG15749 interacts with CG5383 .
TRiP has 1 RNAi stocks for FBgn0030477 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030477 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	2.40	None
Head	2 ± 0	0 of 4	2.70	None
Eye	1 ± 0	0 of 4	1.67	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	3.90	None
Salivary gland	2 ± 0	0 of 4	2.42	None
Crop	3 ± 1	0 of 4	3.60	None
Midgut	1 ± 0	0 of 4	1.60	None
Tubule	1 ± 0	0 of 4	1.50	Up
Hindgut	1 ± 0	0 of 4	1.80	None
Heart	1 ± 0	0 of 4	1.50	None
Fat body	2 ± 2	0 of 4	2.64	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	0 ± 0	0 of 4	1.00	None
Male accessory glands	3 ± 1	0 of 4	3.50	None
Virgin spermatheca	1 ± 0	0 of 4	1.42	None
Mated spermatheca	0 ± 0	0 of 4	0.81	None
Adult carcass	2 ± 0	0 of 4	2.40	None
Larval CNS	1 ± 0	0 of 4	1.17	None
Larval Salivary gland	4 ± 1	0 of 4	4.86	None
Larval midgut	1 ± 0	0 of 4	1.22	None
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	1 ± 0	0 of 4	1.94	None
Larval fat body	2 ± 0	0 of 4	2.30	Up
Larval trachea	1 ± 0	0 of 4	1.53	None
Larval carcass	2 ± 1	0 of 4	2.64	None
S2 cells (growing)	1 ± 0	0 of 4	1.11	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0030477. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720