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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030477 through 18771 annotations produced 1 hits



doublesex-Mab related 11E (dmrt11E):

Annotation Number : CG15749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030477
Gbrowse : chrX:13262232-13264366 (+) // 100.0 //
Probeset : 1624940_at
Accessions : protein= NP_511146;, nucleotide= NM_078591;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic ann
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0030477.
BioGrid reports that CG15749 interacts with CG5383 .
TRiP has 1 RNAi stocks for FBgn0030477 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 2.40None
Head2 00 of 4 2.70None
Eye1 00 of 4 1.67None
Thoracicoabdominal ganglion3 10 of 4 3.90None
Salivary gland2 00 of 4 2.42None
Crop3 10 of 4 3.60None
Midgut1 00 of 4 1.60None
Tubule1 00 of 4 1.50Up
Hindgut1 00 of 4 1.80None
Heart1 00 of 4 1.50None
Fat body2 20 of 4 2.64None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 1.00None
Male accessory glands3 10 of 4 3.50None
Virgin spermatheca1 00 of 4 1.42None
Mated spermatheca0 00 of 4 0.81None
Adult carcass2 00 of 4 2.40None
Larval CNS1 00 of 4 1.17None
Larval Salivary gland4 10 of 4 4.86None
Larval midgut1 00 of 4 1.22None
Larval tubule1 00 of 4 1.20None
Larval hindgut1 00 of 4 1.94None
Larval fat body2 00 of 4 2.30Up
Larval trachea1 00 of 4 1.53None
Larval carcass2 10 of 4 2.64None
S2 cells (growing)1 00 of 4 1.11None
Whole fly0 00 of 4

Looking for FBgn0030477. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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