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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030479 through 18771 annotations produced 2 hits



Rbp1-like (Rbp1-like):

Annotation Number : CG1987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030479
Gbrowse : chrX:13274721-13278906 (-) // 100.0 //
Probeset : 1626413_at
Accessions : protein= NP_572880;, nucleotide= NM_132652;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006376 // mRNA splice site selection // inferre
FlyMine data for FBgn0030479.
BDGP gene expression has embryonic in situ data for Rbp1-like: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0030479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain623 ± 494 of 417.70Up
Head70 ± 94 of 4 2.00Up
Eye104 ± 64 of 4 2.95Up
Thoracicoabdominal ganglion411 ± 224 of 411.60Up
Salivary gland105 ± 74 of 4 2.98Up
Crop36 ± 14 of 4 1.00None
Midgut22 ± 44 of 4 0.60Down
Tubule15 ± 13 of 4 0.40Down
Hindgut47 ± 24 of 4 1.40Up
Heart29 ± 24 of 4 0.82None
Fat body31 ± 74 of 4 0.89None
Ovary37 ± 24 of 4 1.10None
Testis13 ± 02 of 4 0.40Down
Male accessory glands297 ± 104 of 4 8.40Up
Virgin spermatheca18 ± 23 of 4 0.52Down
Mated spermatheca20 ± 34 of 4 0.59Down
Adult carcass74 ± 94 of 4 2.10Up
Larval CNS142 ± 214 of 4 4.03Up
Larval Salivary gland123 ± 34 of 4 3.51Up
Larval midgut35 ± 34 of 4 1.01None
Larval tubule59 ± 14 of 4 1.70Up
Larval hindgut45 ± 24 of 4 1.27Up
Larval fat body36 ± 24 of 4 1.00None
Larval trachea39 ± 14 of 4 1.12None
Larval carcass31 ± 14 of 4 0.89None
S2 cells (growing)68 ± 24 of 4 1.95Up
Whole fly35 ± 14 of 4



():

Annotation Number : CG32634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:13275763-13276733 (-) // 100.0 //
Probeset : 1633451_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain677 ± 454 of 424.00Up
Head44 ± 64 of 4 1.60None
Eye220 ± 64 of 4 7.81Up
Thoracicoabdominal ganglion557 ± 284 of 419.70Up
Salivary gland145 ± 284 of 4 5.13Up
Crop53 ± 64 of 4 1.90Up
Midgut51 ± 34 of 4 1.80Up
Tubule61 ± 44 of 4 2.20Up
Hindgut56 ± 34 of 4 2.00Up
Heart57 ± 44 of 4 2.03Up
Fat body43 ± 44 of 4 1.54Up
Ovary16 ± 24 of 4 0.60Down
Testis10 ± 14 of 4 0.40Down
Male accessory glands259 ± 34 of 4 9.20Up
Virgin spermatheca50 ± 24 of 4 1.79Up
Mated spermatheca60 ± 74 of 4 2.14Up
Adult carcass57 ± 104 of 4 2.00None
Larval CNS151 ± 164 of 4 5.36Up
Larval Salivary gland169 ± 74 of 4 6.00Up
Larval midgut34 ± 31 of 4 1.23None
Larval tubule43 ± 14 of 4 1.50Up
Larval hindgut30 ± 24 of 4 1.08None
Larval fat body39 ± 14 of 4 1.40Up
Larval trachea124 ± 104 of 4 4.41Up
Larval carcass42 ± 04 of 4 1.51Up
S2 cells (growing)41 ± 24 of 4 1.48Up
Whole fly28 ± 34 of 4

Looking for FBgn0030479. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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