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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030482 through 18771 annotations produced 1 hits



(CG1673):

Annotation Number : CG1673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030482
Gbrowse : chrX:13290925-13295262 (+) // 100.0 //
Probeset : 1623770_at
Accessions : protein= NP_572884;, nucleotide= NM_132656;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transamina
FlyMine data for FBgn0030482.
BDGP gene expression has embryonic in situ data for CG1673: 6 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030482 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 24 of 4 0.10Down
Head198 ± 274 of 4 0.80None
Eye137 ± 134 of 4 0.53Down
Thoracicoabdominal ganglion46 ± 34 of 4 0.20Down
Salivary gland21 ± 34 of 4 0.08Down
Crop54 ± 34 of 4 0.20Down
Midgut18 ± 14 of 4 0.10Down
Tubule1399 ± 1534 of 4 5.40Up
Hindgut41 ± 14 of 4 0.20Down
Heart1647 ± 444 of 4 6.41Up
Fat body2378 ± 324 of 4 9.25Up
Ovary71 ± 34 of 4 0.30Down
Testis7 ± 13 of 4 0.00Down
Male accessory glands5 ± 21 of 4 0.00Down
Virgin spermatheca979 ± 804 of 4 3.81Up
Mated spermatheca721 ± 794 of 4 2.81Up
Adult carcass1105 ± 924 of 4 4.30Up
Larval CNS73 ± 154 of 4 0.29Down
Larval Salivary gland464 ± 224 of 4 1.81Up
Larval midgut173 ± 124 of 4 0.68None
Larval tubule23 ± 14 of 4 0.10Down
Larval hindgut309 ± 394 of 4 1.20None
Larval fat body69 ± 94 of 4 0.30Down
Larval trachea305 ± 284 of 4 1.19None
Larval carcass1049 ± 1274 of 4 4.08Up
S2 cells (growing)461 ± 304 of 4 1.80Up
Whole fly257 ± 304 of 4

Looking for FBgn0030482. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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