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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030503 through 18771 annotations produced 1 hits



Transport and Golgi organization 2 (Tango2):

Annotation Number : CG11176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030503
Gbrowse : chrX:13511024-13513248 (+) // 100.0 //
Probeset : 1634925_at
Accessions : protein= NP_572905;, nucleotide= NM_132677;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030503.
BDGP gene expression has embryonic in situ data for CG11176: 4 pix of staining in 1 body parts.
BioGrid reports that CG11176 interacts with CG5345 CG5630 CG9262 CG4276 CG9610 .
VDRC has 1 RNAi stocks for FBgn0030503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 0.30Down
Head19 ± 24 of 4 0.20Down
Eye49 ± 54 of 4 0.44Down
Thoracicoabdominal ganglion29 ± 24 of 4 0.30Down
Salivary gland46 ± 32 of 4 0.41Down
Crop44 ± 24 of 4 0.40Down
Midgut122 ± 54 of 4 1.10None
Tubule2011 ± 624 of 417.90Up
Hindgut63 ± 64 of 4 0.60Down
Heart49 ± 34 of 4 0.44Down
Fat body41 ± 94 of 4 0.37Down
Ovary97 ± 24 of 4 0.90None
Testis176 ± 34 of 4 1.60Up
Male accessory glands35 ± 24 of 4 0.30Down
Virgin spermatheca74 ± 64 of 4 0.67Down
Mated spermatheca66 ± 54 of 4 0.59Down
Adult carcass33 ± 34 of 4 0.30Down
Larval CNS59 ± 84 of 4 0.53Down
Larval Salivary gland79 ± 34 of 4 0.71Down
Larval midgut391 ± 234 of 4 3.49Up
Larval tubule1203 ± 984 of 410.70Up
Larval hindgut70 ± 124 of 4 0.63Down
Larval fat body255 ± 154 of 4 2.30Up
Larval trachea51 ± 114 of 4 0.46Down
Larval carcass60 ± 54 of 4 0.54Down
S2 cells (growing)31 ± 04 of 4 0.28Down
Whole fly112 ± 94 of 4

Looking for FBgn0030503. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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