FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030506 through 18771 annotations produced 1 hits

ligase4 (Lig4):

Annotation Number : CG12176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030506
Gbrowse : chrX:13558616-13561841 (-) // 99.8 //
Probeset : 1641252_at
Accessions : protein= NP_572907;, nucleotide= NM_132679;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003910 // DNA ligase (ATP) activity // inferred from
FlyMine data for FBgn0030506.
BDGP gene expression has embryonic in situ data for CG12176: 4 pix of staining in 1 body parts.
Homophila reports that CG12176 is a close match (3e-17) to human gene LIG1 (NP_000225), a gene associated with DNA ligase I deficiency (3).
BioGrid reports that CG12176 interacts with CG3978 .
VDRC has 1 RNAi stocks for FBgn0030506 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	61 ± 2	4 of 4	1.00	None
Head	46 ± 3	4 of 4	0.70	Down
Eye	34 ± 2	4 of 4	0.54	Down
Thoracicoabdominal ganglion	61 ± 2	4 of 4	1.00	None
Salivary gland	38 ± 4	4 of 4	0.60	Down
Crop	29 ± 1	4 of 4	0.50	Down
Midgut	34 ± 1	4 of 4	0.50	Down
Tubule	51 ± 1	4 of 4	0.80	Down
Hindgut	33 ± 1	4 of 4	0.50	Down
Heart	24 ± 2	4 of 4	0.39	Down
Fat body	40 ± 7	4 of 4	0.64	Down
Ovary	127 ± 0	4 of 4	2.00	Up
Testis	97 ± 8	4 of 4	1.50	Up
Male accessory glands	34 ± 2	4 of 4	0.50	Down
Virgin spermatheca	33 ± 2	4 of 4	0.53	Down
Mated spermatheca	40 ± 2	4 of 4	0.64	Down
Adult carcass	32 ± 4	3 of 4	0.50	Down
Larval CNS	45 ± 4	4 of 4	0.72	Down
Larval Salivary gland	33 ± 2	4 of 4	0.53	Down
Larval midgut	30 ± 1	4 of 4	0.49	Down
Larval tubule	42 ± 2	4 of 4	0.70	Down
Larval hindgut	27 ± 2	4 of 4	0.44	Down
Larval fat body	36 ± 1	4 of 4	0.60	Down
Larval trachea	29 ± 4	4 of 4	0.47	Down
Larval carcass	20 ± 3	4 of 4	0.33	Down
S2 cells (growing)	49 ± 1	4 of 4	0.79	Down
Whole fly	63 ± 1	4 of 4

Looking for FBgn0030506. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720