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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030506 through 18771 annotations produced 1 hits



ligase4 (Lig4):

Annotation Number : CG12176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030506
Gbrowse : chrX:13558616-13561841 (-) // 99.8 //
Probeset : 1641252_at
Accessions : protein= NP_572907;, nucleotide= NM_132679;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003910 // DNA ligase (ATP) activity // inferred from
FlyMine data for FBgn0030506.
BDGP gene expression has embryonic in situ data for CG12176: 4 pix of staining in 1 body parts.
Homophila reports that CG12176 is a close match (3e-17) to human gene LIG1 (NP_000225), a gene associated with DNA ligase I deficiency (3).
BioGrid reports that CG12176 interacts with CG3978 .
VDRC has 1 RNAi stocks for FBgn0030506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 24 of 4 1.00None
Head46 34 of 4 0.70Down
Eye34 24 of 4 0.54Down
Thoracicoabdominal ganglion61 24 of 4 1.00None
Salivary gland38 44 of 4 0.60Down
Crop29 14 of 4 0.50Down
Midgut34 14 of 4 0.50Down
Tubule51 14 of 4 0.80Down
Hindgut33 14 of 4 0.50Down
Heart24 24 of 4 0.39Down
Fat body40 74 of 4 0.64Down
Ovary127 04 of 4 2.00Up
Testis97 84 of 4 1.50Up
Male accessory glands34 24 of 4 0.50Down
Virgin spermatheca33 24 of 4 0.53Down
Mated spermatheca40 24 of 4 0.64Down
Adult carcass32 43 of 4 0.50Down
Larval CNS45 44 of 4 0.72Down
Larval Salivary gland33 24 of 4 0.53Down
Larval midgut30 14 of 4 0.49Down
Larval tubule42 24 of 4 0.70Down
Larval hindgut27 24 of 4 0.44Down
Larval fat body36 14 of 4 0.60Down
Larval trachea29 44 of 4 0.47Down
Larval carcass20 34 of 4 0.33Down
S2 cells (growing)49 14 of 4 0.79Down
Whole fly63 14 of 4

Looking for FBgn0030506. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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