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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030508 through 18771 annotations produced 1 hits



(CG15760):

Annotation Number : CG15760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030508
Gbrowse : chrX:13563731-13568511 (+) // 100.0 //
Probeset : 1625911_at
Accessions : protein= NP_572909;, nucleotide= NM_132681;
FlyMine data for FBgn0030508.
BioGrid reports that CG15760 interacts with CG3395 .
VDRC has 4 RNAi stocks for FBgn0030508 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 34 of 410.40Up
Head10 ± 13 of 4 3.00Up
Eye44 ± 34 of 412.44Up
Thoracicoabdominal ganglion23 ± 44 of 4 6.50Up
Salivary gland2 ± 00 of 4 0.73None
Crop2 ± 00 of 4 0.70None
Midgut2 ± 00 of 4 0.50None
Tubule2 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.50None
Heart5 ± 21 of 4 1.44None
Fat body5 ± 30 of 4 1.44None
Ovary0 ± 00 of 4 0.20None
Testis11 ± 04 of 4 3.30Up
Male accessory glands4 ± 20 of 4 1.30None
Virgin spermatheca1 ± 00 of 4 0.35None
Mated spermatheca4 ± 20 of 4 1.13None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS9 ± 31 of 4 2.75Up
Larval Salivary gland3 ± 10 of 4 0.90None
Larval midgut1 ± 00 of 4 0.35None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.55None
Larval fat body3 ± 10 of 4 1.10None
Larval trachea2 ± 10 of 4 0.60None
Larval carcass0 ± 00 of 4 0.17None
S2 cells (growing)1 ± 00 of 4 0.47None
Whole fly3 ± 10 of 4

Looking for FBgn0030508. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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