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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030509 through 18771 annotations produced 1 hits



(CG11162):

Annotation Number : CG11162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030509
Gbrowse : chrX:13570947-13571854 (+) // 100.0 //
Probeset : 1641715_at
Accessions : protein= NP_572910;, nucleotide= NM_132682;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electro
Interpro : 0000254 // C-4 methylsterol oxidase activity // inferred from sequence or structural similarity /// 0000254 // C-4 methy
FlyMine data for FBgn0030509.
VDRC has 1 RNAi stocks for FBgn0030509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00None
Head2 ± 00 of 4 0.10None
Eye0 ± 00 of 4 0.04None
Thoracicoabdominal ganglion0 ± 00 of 4 0.00None
Salivary gland5 ± 20 of 4 0.32None
Crop1 ± 00 of 4 0.10None
Midgut267 ± 264 of 415.30Up
Tubule4 ± 10 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20None
Heart2 ± 00 of 4 0.16None
Fat body3 ± 20 of 4 0.17None
Ovary1 ± 10 of 4 0.10None
Testis6 ± 00 of 4 0.30None
Male accessory glands1 ± 00 of 4 0.10None
Virgin spermatheca2 ± 10 of 4 0.16None
Mated spermatheca3 ± 00 of 4 0.17None
Adult carcass3 ± 10 of 4 0.20None
Larval CNS2 ± 00 of 4 0.12None
Larval Salivary gland1 ± 00 of 4 0.11None
Larval midgut282 ± 664 of 416.14Up
Larval tubule2 ± 10 of 4 0.20None
Larval hindgut1 ± 00 of 4 0.06None
Larval fat body7 ± 20 of 4 0.40None
Larval trachea0 ± 00 of 4 0.04None
Larval carcass1 ± 00 of 4 0.07None
S2 cells (growing)2 ± 00 of 4 0.12None
Whole fly17 ± 53 of 4

Looking for FBgn0030509. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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