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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030511 through 18771 annotations produced 1 hits



(CG11158):

Annotation Number : CG11158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030511
Gbrowse : chrX:13576939-13578657 (+) // 100.0 //
Probeset : 1626949_at
Accessions : protein= NP_572912;, nucleotide= NM_132684;
FlyMine data for FBgn0030511.
BDGP gene expression has embryonic in situ data for CG11158: 14 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0030511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 34 of 4 1.70Up
Head90 ± 54 of 4 2.00Up
Eye58 ± 64 of 4 1.31None
Thoracicoabdominal ganglion106 ± 34 of 4 2.40Up
Salivary gland91 ± 34 of 4 2.07Up
Crop74 ± 44 of 4 1.70Up
Midgut74 ± 54 of 4 1.70Up
Tubule97 ± 54 of 4 2.20Up
Hindgut59 ± 14 of 4 1.30None
Heart91 ± 54 of 4 2.06Up
Fat body142 ± 224 of 4 3.21Up
Ovary28 ± 24 of 4 0.60Down
Testis11 ± 04 of 4 0.30Down
Male accessory glands99 ± 34 of 4 2.20Up
Virgin spermatheca178 ± 44 of 4 4.02Up
Mated spermatheca164 ± 64 of 4 3.70Up
Adult carcass82 ± 74 of 4 1.90Up
Larval CNS57 ± 34 of 4 1.29None
Larval Salivary gland73 ± 104 of 4 1.64None
Larval midgut77 ± 54 of 4 1.74Up
Larval tubule69 ± 24 of 4 1.60Up
Larval hindgut68 ± 24 of 4 1.53Up
Larval fat body41 ± 74 of 4 0.90None
Larval trachea84 ± 64 of 4 1.90Up
Larval carcass82 ± 184 of 4 1.86None
S2 cells (growing)41 ± 14 of 4 0.92None
Whole fly44 ± 54 of 4

Looking for FBgn0030511. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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